Literature DB >> 33412560

Structured environments foster competitor coexistence by manipulating interspecies interfaces.

Tristan Ursell1,2,3.   

Abstract

Natural environments, like soils or the mammalian gut, frequently contain microbial consortia competing within a niche, wherein many species contain genetically encoded mechanisms of interspecies competition. Recent computational work suggests that physical structures in the environment can stabilize local competition between species that would otherwise be subject to competitive exclusion under isotropic conditions. Here we employ Lotka-Volterra models to show that interfacial competition localizes to physical structures, stabilizing competitive ecological networks of many species, even with significant differences in the strength of competitive interactions between species. Within a limited range of parameter space, we show that for stable communities the length-scale of physical structure inversely correlates with the width of the distribution of competitive fitness, such that physical environments with finer structure can sustain a broader spectrum of interspecific competition. These results highlight the potentially stabilizing effects of physical structure on microbial communities and lay groundwork for engineering structures that stabilize and/or select for diverse communities of ecological, medical, or industrial utility.

Entities:  

Mesh:

Year:  2021        PMID: 33412560      PMCID: PMC7790539          DOI: 10.1371/journal.pcbi.1007762

Source DB:  PubMed          Journal:  PLoS Comput Biol        ISSN: 1553-734X            Impact factor:   4.475


  90 in total

1.  Coexistence versus extinction in the stochastic cyclic Lotka-Volterra model.

Authors:  Tobias Reichenbach; Mauro Mobilia; Erwin Frey
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2006-11-10

Review 2.  Ecological and evolutionary forces shaping microbial diversity in the human intestine.

Authors:  Ruth E Ley; Daniel A Peterson; Jeffrey I Gordon
Journal:  Cell       Date:  2006-02-24       Impact factor: 41.582

3.  Defined spatial structure stabilizes a synthetic multispecies bacterial community.

Authors:  Hyun Jung Kim; James Q Boedicker; Jang Wook Choi; Rustem F Ismagilov
Journal:  Proc Natl Acad Sci U S A       Date:  2008-11-14       Impact factor: 11.205

4.  Spatial aspects of interspecific competition.

Authors:  R Durrett; S Levin
Journal:  Theor Popul Biol       Date:  1998-02       Impact factor: 1.570

5.  Multistability in the cyclic competition system.

Authors:  Junpyo Park; Younghae Do; Bongsoo Jang
Journal:  Chaos       Date:  2018-11       Impact factor: 3.642

6.  Intransitivity is infrequent and fails to promote annual plant coexistence without pairwise niche differences.

Authors:  Oscar Godoy; Daniel B Stouffer; Nathan J B Kraft; Jonathan M Levine
Journal:  Ecology       Date:  2017-04-11       Impact factor: 5.499

7.  Effect of flow and peristaltic mixing on bacterial growth in a gut-like channel.

Authors:  Jonas Cremer; Igor Segota; Chih-Yu Yang; Markus Arnoldini; John T Sauls; Zhongge Zhang; Edgar Gutierrez; Alex Groisman; Terence Hwa
Journal:  Proc Natl Acad Sci U S A       Date:  2016-09-28       Impact factor: 11.205

8.  Microbial co-occurrence relationships in the human microbiome.

Authors:  Karoline Faust; J Fah Sathirapongsasuti; Jacques Izard; Nicola Segata; Dirk Gevers; Jeroen Raes; Curtis Huttenhower
Journal:  PLoS Comput Biol       Date:  2012-07-12       Impact factor: 4.475

9.  A communal catalogue reveals Earth's multiscale microbial diversity.

Authors:  Luke R Thompson; Jon G Sanders; Daniel McDonald; Amnon Amir; Joshua Ladau; Kenneth J Locey; Robert J Prill; Anupriya Tripathi; Sean M Gibbons; Gail Ackermann; Jose A Navas-Molina; Stefan Janssen; Evguenia Kopylova; Yoshiki Vázquez-Baeza; Antonio González; James T Morton; Siavash Mirarab; Zhenjiang Zech Xu; Lingjing Jiang; Mohamed F Haroon; Jad Kanbar; Qiyun Zhu; Se Jin Song; Tomasz Kosciolek; Nicholas A Bokulich; Joshua Lefler; Colin J Brislawn; Gregory Humphrey; Sarah M Owens; Jarrad Hampton-Marcell; Donna Berg-Lyons; Valerie McKenzie; Noah Fierer; Jed A Fuhrman; Aaron Clauset; Rick L Stevens; Ashley Shade; Katherine S Pollard; Kelly D Goodwin; Janet K Jansson; Jack A Gilbert; Rob Knight
Journal:  Nature       Date:  2017-11-01       Impact factor: 49.962

10.  Ecological modeling from time-series inference: insight into dynamics and stability of intestinal microbiota.

Authors:  Richard R Stein; Vanni Bucci; Nora C Toussaint; Charlie G Buffie; Gunnar Rätsch; Eric G Pamer; Chris Sander; João B Xavier
Journal:  PLoS Comput Biol       Date:  2013-12-12       Impact factor: 4.475

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  1 in total

1.  Biofilm cultivation facilitates coexistence and adaptive evolution in an industrial bacterial community.

Authors:  Nathalie N S E Henriksen; Mads Frederik Hansen; Heiko T Kiesewalter; Jakob Russel; Joseph Nesme; Kevin R Foster; Birte Svensson; Gunnar Øregaard; Jakob Herschend; Mette Burmølle
Journal:  NPJ Biofilms Microbiomes       Date:  2022-07-20       Impact factor: 8.462

  1 in total

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