Literature DB >> 27624074

Application of oxime-diversification to optimize ligand interactions within a cryptic pocket of the polo-like kinase 1 polo-box domain.

Xue Zhi Zhao1, David Hymel1, Terrence R Burke2.   

Abstract

By a process involving initial screening of a set of 87 aldehydes using an oxime ligation-based strategy, we were able to achieve a several-fold affinity enhancement over one of the most potent previously known polo-like kinase 1 (Plk1) polo-box domain (PBD) binding inhibitors. This improved binding may result by accessing a newly identified auxiliary region proximal to a key hydrophobic cryptic pocket on the surface of the protein. Our findings could have general applicability to the design of PBD-binding antagonists. Published by Elsevier Ltd.

Entities:  

Keywords:  Cryptic binding pocket; Ligand optimization; Oxime ligation; Plk1 polo-box domain

Mesh:

Substances:

Year:  2016        PMID: 27624074      PMCID: PMC5061138          DOI: 10.1016/j.bmcl.2016.08.098

Source DB:  PubMed          Journal:  Bioorg Med Chem Lett        ISSN: 0960-894X            Impact factor:   2.823


  19 in total

Review 1.  Recent Advances and New Strategies in Targeting Plk1 for Anticancer Therapy.

Authors:  Kyung S Lee; Terrence R Burke; Jung-Eun Park; Jeong K Bang; Eunhye Lee
Journal:  Trends Pharmacol Sci       Date:  2015-10-17       Impact factor: 14.819

Review 2.  Multifaceted polo-like kinases: drug targets and antitargets for cancer therapy.

Authors:  Klaus Strebhardt
Journal:  Nat Rev Drug Discov       Date:  2010-08       Impact factor: 84.694

3.  Oxime-based linker libraries as a general approach for the rapid generation and screening of multidentate inhibitors.

Authors:  Medhanit Bahta; Fa Liu; Sung-Eun Kim; Andrew G Stephen; Robert J Fisher; Terrence R Burke
Journal:  Nat Protoc       Date:  2012-03-15       Impact factor: 13.491

4.  Identification of high affinity polo-like kinase 1 (Plk1) polo-box domain binding peptides using oxime-based diversification.

Authors:  Fa Liu; Jung-Eun Park; Wen-Jian Qian; Dan Lim; Andrej Scharow; Thorsten Berg; Michael B Yaffe; Kyung S Lee; Terrence R Burke
Journal:  ACS Chem Biol       Date:  2012-02-14       Impact factor: 5.100

5.  Neighbor-directed histidine N (τ)-alkylation: A route to imidazolium-containing phosphopeptide macrocycles.

Authors:  Wen-Jian Qian; Jung-Eun Park; Robert Grant; Christopher C Lai; James A Kelley; Michael B Yaffe; Kyung S Lee; Terrence R Burke
Journal:  Biopolymers       Date:  2015-11       Impact factor: 2.505

6.  Structural and functional analyses of minimal phosphopeptides targeting the polo-box domain of polo-like kinase 1.

Authors:  Sang-Moon Yun; Tinoush Moulaei; Dan Lim; Jeong K Bang; Jung-Eun Park; Shilpa R Shenoy; Fa Liu; Young H Kang; Chenzhong Liao; Nak-Kyun Soung; Sunhee Lee; Do-Young Yoon; Yoongho Lim; Dong-Hee Lee; Akira Otaka; Ettore Appella; James B McMahon; Marc C Nicklaus; Terrence R Burke; Michael B Yaffe; Alexander Wlodawer; Kyung S Lee
Journal:  Nat Struct Mol Biol       Date:  2009-07-13       Impact factor: 15.369

7.  Peptoid-Peptide hybrid ligands targeting the polo box domain of polo-like kinase 1.

Authors:  Fa Liu; Jung-Eun Park; Wen-Jian Qian; Dan Lim; Andrej Scharow; Thorsten Berg; Michael B Yaffe; Kyung S Lee; Terrence R Burke
Journal:  Chembiochem       Date:  2012-05-08       Impact factor: 3.164

8.  High-throughput interrogation of ligand binding mode using a fluorescence-based assay.

Authors:  Paweł Śledź; Steffen Lang; Christopher J Stubbs; Chris Abell
Journal:  Angew Chem Int Ed Engl       Date:  2012-06-22       Impact factor: 15.336

9.  From crystal packing to molecular recognition: prediction and discovery of a binding site on the surface of polo-like kinase 1.

Authors:  Paweł Śledź; Christopher J Stubbs; Steffen Lang; Yong-Qing Yang; Grahame J McKenzie; Ashok R Venkitaraman; Marko Hyvönen; Chris Abell
Journal:  Angew Chem Int Ed Engl       Date:  2011-03-29       Impact factor: 15.336

10.  Using ligand-mapping simulations to design a ligand selectively targeting a cryptic surface pocket of polo-like kinase 1.

Authors:  Yaw Sing Tan; Paweł Śledź; Steffen Lang; Christopher J Stubbs; David R Spring; Chris Abell; Robert B Best
Journal:  Angew Chem Int Ed Engl       Date:  2012-09-07       Impact factor: 15.336

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  7 in total

1.  Targeting Protein-Protein Interactions of Tyrosine Phosphatases with Microarrayed Fragment Libraries Displayed on Phosphopeptide Substrate Scaffolds.

Authors:  Megan Hogan; Medhanit Bahta; Kohei Tsuji; Trung X Nguyen; Scott Cherry; George T Lountos; Joseph E Tropea; Bryan M Zhao; Xue Zhi Zhao; David S Waugh; Terrence R Burke; Robert G Ulrich
Journal:  ACS Comb Sci       Date:  2019-01-31       Impact factor: 3.784

2.  Enhancing polo-like kinase 1 selectivity of polo-box domain-binding peptides.

Authors:  Xue Zhi Zhao; David Hymel; Terrence R Burke
Journal:  Bioorg Med Chem       Date:  2017-02-28       Impact factor: 3.641

3.  Histidine N(τ)-cyclized macrocycles as a new genre of polo-like kinase 1 polo-box domain-binding inhibitors.

Authors:  David Hymel; Robert A Grant; Kohei Tsuji; Michael B Yaffe; Terrence R Burke
Journal:  Bioorg Med Chem Lett       Date:  2018-08-19       Impact factor: 2.823

Review 4.  Application of Post Solid-Phase Oxime Ligation to Fine-Tune Peptide-Protein Interactions.

Authors:  Xue Zhi Zhao; Fa Liu; Terrence R Burke
Journal:  Molecules       Date:  2020-06-18       Impact factor: 4.411

5.  Development of ultra-high affinity bivalent ligands targeting the polo-like kinase 1.

Authors:  Kohei Tsuji; David Hymel; Buyong Ma; Hirokazu Tamamura; Ruth Nussinov; Terrence R Burke
Journal:  RSC Chem Biol       Date:  2022-07-15

Review 6.  Current progress and future perspectives in the development of anti-polo-like kinase 1 therapeutic agents.

Authors:  Jung-Eun Park; David Hymel; Terrence R Burke; Kyung S Lee
Journal:  F1000Res       Date:  2017-06-29

7.  Design and synthesis of a new orthogonally protected glutamic acid analog and its use in the preparation of high affinity polo-like kinase 1 polo-box domain - binding peptide macrocycles.

Authors:  David Hymel; Kohei Tsuji; Robert A Grant; Ramesh M Chingle; Dominique L Kunciw; Michael B Yaffe; Terrence R Burke
Journal:  Org Biomol Chem       Date:  2021-09-22       Impact factor: 3.876

  7 in total

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