Literature DB >> 27617391

A conditional proteomics approach to identify proteins involved in zinc homeostasis.

Takayuki Miki1, Masashi Awa1, Yuki Nishikawa1, Shigeki Kiyonaka1, Masaki Wakabayashi2, Yasushi Ishihama2, Itaru Hamachi1,3.   

Abstract

Zinc signaling and dynamics play significant roles in many physiological responses and diseases. To understand the physiological roles of zinc in detail, comprehensive identification of proteins under high concentration of mobile zinc ion is crucial. We developed a 'conditional proteomics' approach to identify proteins involved in zinc homeostasis based on a chemical proteomic strategy that utilizes designer zinc-responsive labeling reagents to tag such proteins and quantitative mass spectrometry for their identification. We used this method to elucidate zinc dyshomeostasis induced by nitric-oxide-triggered oxidative stress in glioma cells, and we unveiled dynamic changes of the zinc-related proteomes. Moreover, we characterized unknown zinc-rich vesicles generated by oxidative stress as endoplasmic-reticulum- and Golgi-related vesicles.

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Year:  2016        PMID： 27617391     DOI： 10.1038/nmeth.3998

Source DB:  PubMed          Journal:  Nat Methods        ISSN： 1548-7091            Impact factor:   28.547


  39 in total

1.  Rab1 recruitment of p115 into a cis-SNARE complex: programming budding COPII vesicles for fusion.

Authors:  B B Allan; B D Moyer; W E Balch
Journal:  Science       Date:  2000-07-21       Impact factor: 47.728

Review 2.  Cytosolic zinc buffering and muffling: their role in intracellular zinc homeostasis.

Authors:  Robert A Colvin; William R Holmes; Charles P Fontaine; Wolfgang Maret
Journal:  Metallomics       Date:  2010-04-16       Impact factor: 4.526

3.  Live imaging of bidirectional traffic from the ERGIC.

Authors:  Houchaima Ben-Tekaya; Kota Miura; Rainer Pepperkok; Hans-Peter Hauri
Journal:  J Cell Sci       Date:  2005-01-04       Impact factor: 5.285

Review 4.  The neurobiology of zinc in health and disease.

Authors:  Christopher J Frederickson; Jae-Young Koh; Ashley I Bush
Journal:  Nat Rev Neurosci       Date:  2005-06       Impact factor: 34.870

5.  LDAI-based chemical labeling of intact membrane proteins and its pulse-chase analysis under live cell conditions.

Authors:  Takayuki Miki; Sho-hei Fujishima; Kazuhiro Komatsu; Keiko Kuwata; Shigeki Kiyonaka; Itaru Hamachi
Journal:  Chem Biol       Date:  2014-08-14

6.  Ligand-directed acyl imidazole chemistry for labeling of membrane-bound proteins on live cells.

Authors:  Sho-hei Fujishima; Ryosuke Yasui; Takayuki Miki; Akio Ojida; Itaru Hamachi
Journal:  J Am Chem Soc       Date:  2012-02-24       Impact factor: 15.419

7.  Intracellular zinc distribution and transport in C6 rat glioma cells.

Authors:  Hajo Haase; Detmar Beyersmann
Journal:  Biochem Biophys Res Commun       Date:  2002-08-30       Impact factor: 3.575

8.  Modulation of mitochondrial function by endogenous Zn2+ pools.

Authors:  Stefano L Sensi; Dien Ton-That; Patrick G Sullivan; Elizabeth A Jonas; Kyle R Gee; Leonard K Kaczmarek; John H Weiss
Journal:  Proc Natl Acad Sci U S A       Date:  2003-04-30       Impact factor: 11.205

9.  Crosstalk between nitric oxide and zinc pathways to neuronal cell death involving mitochondrial dysfunction and p38-activated K+ channels.

Authors:  Ella Bossy-Wetzel; Maria V Talantova; Wilson D Lee; Marion N Schölzke; Anne Harrop; Emily Mathews; Thomas Götz; Jiahuai Han; Mark H Ellisman; Guy A Perkins; Stuart A Lipton
Journal:  Neuron       Date:  2004-02-05       Impact factor: 17.173

10.  Oxidative injury triggers autophagy in astrocytes: the role of endogenous zinc.

Authors:  Sook-Jeong Lee; Kyung Sook Cho; Jae-Young Koh
Journal:  Glia       Date:  2009-09       Impact factor: 7.452
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  8 in total

1.  Trail-blAIZin new directions for conditional proteomics.

Authors:  Hashim F Motiwala; Brent R Martin
Journal:  Nat Methods       Date:  2016-10-31       Impact factor: 28.547

Review 2.  Tools and techniques for illuminating the cell biology of zinc.

Authors:  Evan P S Pratt; Leah J Damon; Kelsie J Anson; Amy E Palmer
Journal:  Biochim Biophys Acta Mol Cell Res       Date:  2020-09-24       Impact factor: 4.739

3.  Activity-Based Sensing with a Metal-Directed Acyl Imidazole Strategy Reveals Cell Type-Dependent Pools of Labile Brain Copper.

Authors:  Sumin Lee; Clive Yik-Sham Chung; Pei Liu; Laura Craciun; Yuki Nishikawa; Kevin J Bruemmer; Itaru Hamachi; Kaoru Saijo; Evan W Miller; Christopher J Chang
Journal:  J Am Chem Soc       Date:  2020-08-20       Impact factor: 15.419

4.  Autophagy Increases Zinc Bioavailability to Avoid Light-Mediated Reactive Oxygen Species Production under Zinc Deficiency.

Authors:  Daiki Shinozaki; Ekaterina A Merkulova; Loreto Naya; Tetsuro Horie; Yuri Kanno; Mitsunori Seo; Yoshinori Ohsumi; Céline Masclaux-Daubresse; Kohki Yoshimoto
Journal:  Plant Physiol       Date:  2020-01-15       Impact factor: 8.340

5.  Split-BioID a conditional proteomics approach to monitor the composition of spatiotemporally defined protein complexes.

Authors:  Isabel Myriam Schopp; Cinthia Claudia Amaya Ramirez; Jerneja Debeljak; Elisa Kreibich; Merle Skribbe; Klemens Wild; Julien Béthune
Journal:  Nat Commun       Date:  2017-06-06       Impact factor: 14.919

Review 6.  Functionalised Cofactor Mimics for Interactome Discovery and Beyond.

Authors:  Isabel V L Wilkinson; Martin Pfanzelt; Stephan A Sieber
Journal:  Angew Chem Int Ed Engl       Date:  2022-05-31       Impact factor: 16.823

7.  The Study of Zinc Ions Binding to αS1-, β- and κ-Casein.

Authors:  Agnieszka Rodzik; Paweł Pomastowski; Viorica Railean-Plugaru; Myroslav Sprynskyy; Bogusław Buszewski
Journal:  Int J Mol Sci       Date:  2020-10-30       Impact factor: 5.923

8.  NEAT1 Confers Radioresistance to Hepatocellular Carcinoma Cells by Inducing Autophagy through GABARAP.

Authors:  Hiromi Sakaguchi; Hiroyuki Tsuchiya; Yutaka Kitagawa; Tomohiko Tanino; Kenji Yoshida; Nobue Uchida; Goshi Shiota
Journal:  Int J Mol Sci       Date:  2022-01-10       Impact factor: 5.923
  8 in total

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