Literature DB >> 27613438

Symptom Science: Repurposing Existing Omics Data.

Nicole D Osier1, Christopher C Imes1, Heba Khalil2, Jamie Zelazny1, Ann E Johansson1, Yvette P Conley1.   

Abstract

Omics approaches, including genomics, transcriptomics, proteomics, epigenomics, microbiomics, and metabolomics, generate large data sets. Once they have been used to address initial study aims, these large data sets are extremely valuable to the greater research community for ancillary investigations. Repurposing available omics data sets provides data to address research questions, generate and test hypotheses, replicate findings, and conduct mega-analyses. Many well-characterized, longitudinal, epidemiological studies collected extensive phenotype data related to symptom occurrence and severity. While the main phenotype of interest for many of these studies was often not symptom related, these data were collected to better understand the primary phenotype of interest. A search for symptom data (i.e., cognitive impairment, fatigue, gastrointestinal distress/nausea, sleep, and pain) in the database of genotypes and phenotypes (dbGaP) revealed many studies that collected symptom and omics data. There is thus a real possibility for nurse scientists to be able to look at symptom data over time from thousands of individuals and use omics data to identify key biological underpinnings that account for the development and severity of symptoms without recruiting participants or generating any new data. The purpose of this article is to introduce the reader to resources that provide omics data to the research community for repurposing, provide guidance on using these databases, and encourage the use of these data to move symptom science forward.

Entities:  

Keywords:  big data; omics; repurposing; symptoms

Year:  2016        PMID: 27613438      PMCID: PMC5942510          DOI: 10.1177/1099800416666716

Source DB:  PubMed          Journal:  Biol Res Nurs        ISSN: 1099-8004            Impact factor:   2.522


  5 in total

1.  A path forward for genomic nursing research.

Authors:  Lois A Tully; Patricia A Grady
Journal:  Res Nurs Health       Date:  2015-04-14       Impact factor: 2.228

2.  Current and emerging technology approaches in genomics.

Authors:  Yvette P Conley; Leslie G Biesecker; Stephen Gonsalves; Carrie J Merkle; Maggie Kirk; Bradley E Aouizerat
Journal:  J Nurs Scholarsh       Date:  2013-01-07       Impact factor: 3.176

3.  Nursing Needs Big Data and Big Data Needs Nursing.

Authors:  Patricia Flatley Brennan; Suzanne Bakken
Journal:  J Nurs Scholarsh       Date:  2015-08-19       Impact factor: 3.176

4.  A blueprint for genomic nursing science.

Authors:  Kathleen A Calzone; Jean Jenkins; Alexis D Bakos; Ann K Cashion; Nancy Donaldson; W Gregory Feero; Suzanne Feetham; Patricia A Grady; Ada Sue Hinshaw; Ann R Knebel; Nellie Robinson; Mary E Ropka; Diane Seibert; Kathleen R Stevens; Lois A Tully; Jo Ann Webb
Journal:  J Nurs Scholarsh       Date:  2013-01-31       Impact factor: 3.176

5.  The 2016 database issue of Nucleic Acids Research and an updated molecular biology database collection.

Authors:  Daniel J Rigden; Xosé M Fernández-Suárez; Michael Y Galperin
Journal:  Nucleic Acids Res       Date:  2016-01-04       Impact factor: 16.971

  5 in total

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