Literature DB >> 27599185

Minimalist IR and fluorescence probes of protein function.

Pallavi M Gosavi1, Ivan V Korendovych2.   

Abstract

Spectroscopic studies of small proteins and peptides, especially those requiring fine spatial and/or temporal resolution, demand synthetic probes that confer the minimal possible steric and functional change on the native properties. Here we review the recent progress in development of minimally disruptive probes for fluorescence and infrared spectroscopies, as well as the methods to efficiently incorporate them into proteins. Advances in spectroscopy on the one hand result in high specialization of synthetic probes for a particular purpose, but on the other hand allow for the same probes be used for different techniques to gather complementary biochemical information.
Copyright © 2016 Elsevier Ltd. All rights reserved.

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Year:  2016        PMID: 27599185      PMCID: PMC5107342          DOI: 10.1016/j.cbpa.2016.08.010

Source DB:  PubMed          Journal:  Curr Opin Chem Biol        ISSN: 1367-5931            Impact factor:   8.822


  46 in total

1.  Selective incorporation of nitrile-based infrared probes into proteins via cysteine alkylation.

Authors:  Hyunil Jo; Robert M Culik; Ivan V Korendovych; William F Degrado; Feng Gai
Journal:  Biochemistry       Date:  2010-11-17       Impact factor: 3.162

Review 2.  Fluorescence methods for studying equilibrium macromolecule-ligand interactions.

Authors:  M R Eftink
Journal:  Methods Enzymol       Date:  1997       Impact factor: 1.600

3.  Two-dimensional IR spectroscopy of protein dynamics using two vibrational labels: a site-specific genetically encoded unnatural amino acid and an active site ligand.

Authors:  Megan C Thielges; Jun Y Axup; Daryl Wong; Hyun Soo Lee; Jean K Chung; Peter G Schultz; Michael D Fayer
Journal:  J Phys Chem B       Date:  2011-08-31       Impact factor: 2.991

4.  The Two Dimensional Vibrational Echo of a Nitrile Probe of the Villin HP35 Protein.

Authors:  Diana C Urbanek; Dmitriy Yu Vorobyev; Arnaldo L Serrano; Feng Gai; Robin M Hochstrasser
Journal:  J Phys Chem Lett       Date:  2010       Impact factor: 6.475

5.  Ribonuclease S dynamics measured using a nitrile label with 2D IR vibrational echo spectroscopy.

Authors:  Sayan Bagchi; Steven G Boxer; Michael D Fayer
Journal:  J Phys Chem B       Date:  2012-03-23       Impact factor: 2.991

6.  NMR detection of pH-dependent histidine-water proton exchange reveals the conduction mechanism of a transmembrane proton channel.

Authors:  Fanghao Hu; Klaus Schmidt-Rohr; Mei Hong
Journal:  J Am Chem Soc       Date:  2011-10-21       Impact factor: 15.419

7.  Conformational dynamics and stability of HP35 studied with 2D IR vibrational echoes.

Authors:  Jean K Chung; Megan C Thielges; Michael D Fayer
Journal:  J Am Chem Soc       Date:  2012-07-16       Impact factor: 15.419

8.  5-Cyanotryptophan as an Infrared Probe of Local Hydration Status of Proteins.

Authors:  Matthias M Waegele; Matthew J Tucker; Feng Gai
Journal:  Chem Phys Lett       Date:  2009-09-01       Impact factor: 2.328

9.  Cyanotryptophans as Novel Fluorescent Probes for Studying Protein Conformational Changes and DNA-Protein Interaction.

Authors:  Poulami Talukder; Shengxi Chen; Basab Roy; Petro Yakovchuk; Michelle M Spiering; Mohammad P Alam; Manikandadas M Madathil; Chandrabali Bhattacharya; Stephen J Benkovic; Sidney M Hecht
Journal:  Biochemistry       Date:  2015-12-16       Impact factor: 3.162

10.  Painting proteins blue: β-(1-azulenyl)-L-alanine as a probe for studying protein-protein interactions.

Authors:  Yurii S Moroz; Wolfgang Binder; Patrik Nygren; Gregory A Caputo; Ivan V Korendovych
Journal:  Chem Commun (Camb)       Date:  2013-01-18       Impact factor: 6.222

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  2 in total

1.  Simple method to introduce an ester infrared probe into proteins.

Authors:  Ismail A Ahmed; Feng Gai
Journal:  Protein Sci       Date:  2017-01-14       Impact factor: 6.725

2.  Beneficial Impacts of Incorporating the Non-Natural Amino Acid Azulenyl-Alanine into the Trp-Rich Antimicrobial Peptide buCATHL4B.

Authors:  Areetha R D'Souza; Matthew R Necelis; Alona Kulesha; Gregory A Caputo; Olga V Makhlynets
Journal:  Biomolecules       Date:  2021-03-12
  2 in total

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