Literature DB >> 27813296

Simple method to introduce an ester infrared probe into proteins.

Ismail A Ahmed1, Feng Gai2.   

Abstract

The ester carbonyl stretching vibration has recently been shown to be a sensitive and convenient infrared (IR) probe of protein electrostatics due to the linear dependence of its frequency on local electric field. While an ester moiety can be easily incorporated into peptides via solid-phase synthesis, currently there is no method available to site-specifically incorporate it into a large protein. Herein, we show that it is possible to use a cysteine alkylation reaction to achieve this goal and demonstrate the feasibility of this simple method by successfully incorporating a methyl ester group (CH2 COOCH3 ) into a model peptide (YGGCGG), two amyloid-forming peptides derived from the insulin B chain and Aβ, and bovine serum albumin (BSA). IR results obtained with those peptide and protein systems further confirm the utility of this vibrational probe in monitoring, for example, the structural integrity of amyloid fibrils and ligand binding-induced changes in protein local hydration status.
© 2016 The Protein Society.

Entities:  

Keywords:  amyloid; bovine serum albumin; cysteine alkylation; infrared probe; protein hydration; protein modification

Mesh:

Substances:

Year:  2017        PMID: 27813296      PMCID: PMC5275736          DOI: 10.1002/pro.3076

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  35 in total

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Authors:  Hyunil Jo; Robert M Culik; Ivan V Korendovych; William F Degrado; Feng Gai
Journal:  Biochemistry       Date:  2010-11-17       Impact factor: 3.162

2.  Cyano groups as probes of protein microenvironments and dynamics.

Authors:  Jörg Zimmermann; Megan C Thielges; Young Jun Seo; Philip E Dawson; Floyd E Romesberg
Journal:  Angew Chem Int Ed Engl       Date:  2011-07-20       Impact factor: 15.336

3.  Tidal surge in the M2 proton channel, sensed by 2D IR spectroscopy.

Authors:  Ayanjeet Ghosh; Jade Qiu; William F DeGrado; Robin M Hochstrasser
Journal:  Proc Natl Acad Sci U S A       Date:  2011-03-28       Impact factor: 11.205

4.  Locations of the three primary binding sites for long-chain fatty acids on bovine serum albumin.

Authors:  J A Hamilton; S Era; S P Bhamidipati; R G Reed
Journal:  Proc Natl Acad Sci U S A       Date:  1991-03-15       Impact factor: 11.205

5.  Probing protein folding using site-specifically encoded unnatural amino acids as FRET donors with tryptophan.

Authors:  Shigeki J Miyake-Stoner; Andrew M Miller; Jared T Hammill; Jennifer C Peeler; Kenneth R Hess; Ryan A Mehl; Scott H Brewer
Journal:  Biochemistry       Date:  2009-06-30       Impact factor: 3.162

6.  Infrared and Fluorescence Assessment of Protein Dynamics: From Folding to Function.

Authors:  Bei Ding; Mary Rose Hilaire; Feng Gai
Journal:  J Phys Chem B       Date:  2016-05-25       Impact factor: 2.991

7.  Light-triggered disassembly of amyloid fibrils.

Authors:  Thomas J Measey; Feng Gai
Journal:  Langmuir       Date:  2012-08-16       Impact factor: 3.882

8.  Dynamics surrounding Cys-34 in native, chemically denatured, and silica-adsorbed bovine serum albumin.

Authors:  R Wang; S Sun; E J Bekos; F V Bright
Journal:  Anal Chem       Date:  1995-01-01       Impact factor: 6.986

9.  Two-dimensional infrared spectroscopy reveals the complex behaviour of an amyloid fibril inhibitor.

Authors:  Chris T Middleton; Peter Marek; Ping Cao; Chi-cheng Chiu; Sadanand Singh; Ann Marie Woys; Juan J de Pablo; Daniel P Raleigh; Martin T Zanni
Journal:  Nat Chem       Date:  2012-03-11       Impact factor: 24.427

10.  Probing the electrostatics of active site microenvironments along the catalytic cycle for Escherichia coli dihydrofolate reductase.

Authors:  C Tony Liu; Joshua P Layfield; Robert J Stewart; Jarrod B French; Philip Hanoian; John B Asbury; Sharon Hammes-Schiffer; Stephen J Benkovic
Journal:  J Am Chem Soc       Date:  2014-07-11       Impact factor: 15.419

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  2 in total

1.  PET and FRET utility of an amino acid pair: tryptophan and 4-cyanotryptophan.

Authors:  Ismail A Ahmed; Jeffrey M Rodgers; Christina Eng; Thomas Troxler; Feng Gai
Journal:  Phys Chem Chem Phys       Date:  2019-06-10       Impact factor: 3.676

2.  Site-Specific Interrogation of Protein Structure and Stability.

Authors:  Debopreeti Mukherjee; Ismail A Ahmed; Feng Gai
Journal:  Methods Mol Biol       Date:  2022
  2 in total

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