Literature DB >> 27594172

A Universal Code for mRNA Stability?

Ying-Hsin Chen1, Jeff Coller2.   

Abstract

Precise elimination of maternal mRNAs plays a critical role during the maternal-to-zygotic transition (MZT) to promote developmental processing. Two new studies demonstrate that, in eukaryotes, codon-mediated decay is a conserved mechanism to shape maternal mRNA stability by affecting deadenylation rate in a translation-dependent manner. These studies add to a growing body of literature suggesting that translational elongation rates are a major determinant of mRNA stability.
Copyright © 2016 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  codon optimality; deadenylation; mRNA decay; maternal-to-zygotic transition; translation

Mesh：

Substances：

Year:  2016        PMID： 27594172      PMCID： PMC5074902          DOI： 10.1016/j.tig.2016.08.007

Source DB:  PubMed          Journal:  Trends Genet        ISSN： 0168-9525            Impact factor:   11.639


  10 in total

1.  Codon identity regulates mRNA stability and translation efficiency during the maternal-to-zygotic transition.

Authors:  Ariel A Bazzini; Florencia Del Viso; Miguel A Moreno-Mateos; Timothy G Johnstone; Charles E Vejnar; Yidan Qin; Jun Yao; Mustafa K Khokha; Antonio J Giraldez
Journal:  EMBO J       Date:  2016-07-19       Impact factor: 11.598

2.  The codon Adaptation Index--a measure of directional synonymous codon usage bias, and its potential applications.

Authors:  P M Sharp; W H Li
Journal:  Nucleic Acids Res       Date:  1987-02-11       Impact factor: 16.971

3.  SMAUG is a major regulator of maternal mRNA destabilization in Drosophila and its translation is activated by the PAN GU kinase.

Authors:  Wael Tadros; Aaron L Goldman; Tomas Babak; Fiona Menzies; Leah Vardy; Terry Orr-Weaver; Timothy R Hughes; J Timothy Westwood; Craig A Smibert; Howard D Lipshitz
Journal:  Dev Cell       Date:  2007-01       Impact factor: 12.270

Review 4.  The Maternal-to-Zygotic Transition During Vertebrate Development: A Model for Reprogramming.

Authors:  Valeria Yartseva; Antonio J Giraldez
Journal:  Curr Top Dev Biol       Date:  2015-08-13       Impact factor: 4.897

5.  Codon optimality is a major determinant of mRNA stability.

Authors:  Vladimir Presnyak; Najwa Alhusaini; Ying-Hsin Chen; Sophie Martin; Nathan Morris; Nicholas Kline; Sara Olson; David Weinberg; Kristian E Baker; Brenton R Graveley; Jeff Coller
Journal:  Cell       Date:  2015-03-12       Impact factor: 41.582

6.  Codon Usage and 3' UTR Length Determine Maternal mRNA Stability in Zebrafish.

Authors:  Yuichiro Mishima; Yukihide Tomari
Journal:  Mol Cell       Date:  2016-03-17       Impact factor: 17.970

7.  Modulated Expression of Specific tRNAs Drives Gene Expression and Cancer Progression.

Authors:  Hani Goodarzi; Hoang C B Nguyen; Steven Zhang; Brian D Dill; Henrik Molina; Sohail F Tavazoie
Journal:  Cell       Date:  2016-06-02       Impact factor: 41.582

8.  Codon influence on protein expression in E. coli correlates with mRNA levels.

Authors:  Reka Letso; Helen Neely; W Nicholson Price; Grégory Boël; Kam-Ho Wong; Min Su; Jon Luff; Mayank Valecha; John K Everett; Thomas B Acton; Rong Xiao; Gaetano T Montelione; Daniel P Aalberts; John F Hunt
Journal:  Nature       Date:  2016-01-13       Impact factor: 49.962

9.  Evolutionary conservation of codon optimality reveals hidden signatures of cotranslational folding.

Authors:  Sebastian Pechmann; Judith Frydman
Journal:  Nat Struct Mol Biol       Date:  2012-12-23       Impact factor: 15.369

10.  Unmasking activation of the zygotic genome using chromosomal deletions in the Drosophila embryo.

Authors:  Stefano De Renzis; Olivier Elemento; Saeed Tavazoie; Eric F Wieschaus
Journal:  PLoS Biol       Date:  2007-05       Impact factor: 8.029
  10 in total
  9 in total

1.  Identification of diverse target RNAs that are functionally regulated by human Pumilio proteins.

Authors:  Jennifer A Bohn; Jamie L Van Etten; Trista L Schagat; Brittany M Bowman; Richard C McEachin; Peter L Freddolino; Aaron C Goldstrohm
Journal:  Nucleic Acids Res       Date:  2018-01-09       Impact factor: 16.971

Review 2.  The Interplay between the RNA Decay and Translation Machinery in Eukaryotes.

Authors:  Adam M Heck; Jeffrey Wilusz
Journal:  Cold Spring Harb Perspect Biol       Date:  2018-05-01       Impact factor: 10.005

3.  Determinants of the temperature adaptation of mRNA degradation.

Authors:  Vincent Jaquet; Sandrine Wallerich; Sylvia Voegeli; Demeter Túrós; Eduardo C Viloria; Attila Becskei
Journal:  Nucleic Acids Res       Date:  2022-01-25       Impact factor: 16.971

Review 4.  The Growing Toolbox for Protein Synthesis Studies.

Authors:  Shintaro Iwasaki; Nicholas T Ingolia
Journal:  Trends Biochem Sci       Date:  2017-05-28       Impact factor: 13.807

5.  mRNA levels can be reduced by antisense oligonucleotides via no-go decay pathway.

Authors:  Xue-Hai Liang; Joshua G Nichols; Chih-Wei Hsu; Timothy A Vickers; Stanley T Crooke
Journal:  Nucleic Acids Res       Date:  2019-07-26       Impact factor: 16.971

6.  Evolutionary dynamics of codon usages for peste des petits ruminants virus.

Authors:  Xin Wang; Jing Sun; Lei Lu; Fei-Yang Pu; De-Rong Zhang; Fu-Qiang Xie
Journal:  Front Vet Sci       Date:  2022-08-12

7.  Genetic features of bovine viral diarrhea virus subgenotype 1c in newborn calves at nucleotide and synonymous codon usages.

Authors:  Huihui Wang; Mengzhu Wang; Xili Feng; Yicong Li; Derong Zhang; Yan Cheng; Junlin Liu; Xiezhong Wang; Licheng Zhang; Hua La; Xiaoqian You; Zhongren Ma; Jianhua Zhou
Journal:  Front Vet Sci       Date:  2022-08-31

8.  RNA-Based Strategies for Cardiac Reprogramming of Human Mesenchymal Stromal Cells.

Authors:  Paula Mueller; Markus Wolfien; Katharina Ekat; Cajetan Immanuel Lang; Dirk Koczan; Olaf Wolkenhauer; Olga Hahn; Kirsten Peters; Hermann Lang; Robert David; Heiko Lemcke
Journal:  Cells       Date:  2020-02-22       Impact factor: 6.600

9.  Expression Analysis of mRNA Decay of Maternal Genes during Bombyx mori Maternal-to-Zygotic Transition.

Authors:  Meirong Zhang; Pingzhen Xu; Huilin Pang; Tao Chen; Guozheng Zhang
Journal:  Int J Mol Sci       Date:  2019-11-12       Impact factor: 5.923
  9 in total

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