Literature DB >> 27593693

Advanced Virus Detection Technologies Interest Group (AVDTIG): Efforts on High Throughput Sequencing (HTS) for Virus Detection.

Arifa S Khan1, Dominick A Vacante2, Jean-Pol Cassart3, Siemon H S Ng4, Christophe Lambert5, Robert L Charlebois4, Kathryn E King6.   

Abstract

Several nucleic-acid based technologies have recently emerged with capabilities for broad virus detection. One of these, high throughput sequencing, has the potential for novel virus detection because this method does not depend upon prior viral sequence knowledge. However, the use of high throughput sequencing for testing biologicals poses greater challenges as compared to other newly introduced tests due to its technical complexities and big data bioinformatics. Thus, the Advanced Virus Detection Technologies Users Group was formed as a joint effort by regulatory and industry scientists to facilitate discussions and provide a forum for sharing data and experiences using advanced new virus detection technologies, with a focus on high throughput sequencing technologies. The group was initiated as a task force that was coordinated by the Parenteral Drug Association and subsequently became the Advanced Virus Detection Technologies Interest Group to continue efforts for using new technologies for detection of adventitious viruses with broader participation, including international government agencies, academia, and technology service providers. © PDA, Inc. 2016.

Entities:  

Keywords:  Adventitious viruses; High throughput sequencing; Massively parallel sequencing; New technologies; Next generation sequencing; Virus detection

Mesh:

Year:  2016        PMID: 27593693     DOI: 10.5731/pdajpst.2016.007161

Source DB:  PubMed          Journal:  PDA J Pharm Sci Technol        ISSN: 1079-7440


  6 in total

1.  Report of the second international conference on next generation sequencing for adventitious virus detection in biologics for humans and animals.

Authors:  Arifa S Khan; Johannes Blümel; Dieter Deforce; Marion F Gruber; Carmen Jungbäck; Ivana Knezevic; Laurent Mallet; David Mackay; Jelle Matthijnssens; Maureen O'Leary; Sebastiaan Theuns; Joseph Victoria; Pieter Neels
Journal:  Biologicals       Date:  2020-07-11       Impact factor: 1.856

2.  A Multicenter Study To Evaluate the Performance of High-Throughput Sequencing for Virus Detection.

Authors:  Arifa S Khan; Siemon H S Ng; Olivier Vandeputte; Aisha Aljanahi; Avisek Deyati; Jean-Pol Cassart; Robert L Charlebois; Lanyn P Taliaferro
Journal:  mSphere       Date:  2017-09-13       Impact factor: 4.389

3.  A Reference Viral Database (RVDB) To Enhance Bioinformatics Analysis of High-Throughput Sequencing for Novel Virus Detection.

Authors:  Norman Goodacre; Aisha Aljanahi; Subhiksha Nandakumar; Mike Mikailov; Arifa S Khan
Journal:  mSphere       Date:  2018-03-14       Impact factor: 4.389

4.  Considerations for Optimization of High-Throughput Sequencing Bioinformatics Pipelines for Virus Detection.

Authors:  Christophe Lambert; Cassandra Braxton; Robert L Charlebois; Avisek Deyati; Paul Duncan; Fabio La Neve; Heather D Malicki; Sebastien Ribrioux; Daniel K Rozelle; Brandye Michaels; Wenping Sun; Zhihui Yang; Arifa S Khan
Journal:  Viruses       Date:  2018-09-27       Impact factor: 5.048

5.  Sensitivity and breadth of detection of high-throughput sequencing for adventitious virus detection.

Authors:  Robert L Charlebois; Sarmitha Sathiamoorthy; Carine Logvinoff; Lucy Gisonni-Lex; Laurent Mallet; Siemon H S Ng
Journal:  NPJ Vaccines       Date:  2020-07-17       Impact factor: 7.344

6.  Current Perspectives on High-Throughput Sequencing (HTS) for Adventitious Virus Detection: Upstream Sample Processing and Library Preparation.

Authors:  Siemon H Ng; Cassandra Braxton; Marc Eloit; Szi Fei Feng; Romain Fragnoud; Laurent Mallet; Edward T Mee; Sarmitha Sathiamoorthy; Olivier Vandeputte; Arifa S Khan
Journal:  Viruses       Date:  2018-10-16       Impact factor: 5.048

  6 in total

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