Literature DB >> 27592382

Feature selection methods for big data bioinformatics: A survey from the search perspective.

Lipo Wang1, Yaoli Wang2, Qing Chang3.   

Abstract

This paper surveys main principles of feature selection and their recent applications in big data bioinformatics. Instead of the commonly used categorization into filter, wrapper, and embedded approaches to feature selection, we formulate feature selection as a combinatorial optimization or search problem and categorize feature selection methods into exhaustive search, heuristic search, and hybrid methods, where heuristic search methods may further be categorized into those with or without data-distilled feature ranking measures. Copyright Â
© 2016 Elsevier Inc. All rights reserved.

Keywords:  Biomarkers; Classification; Clustering; Computational biology; Computational intelligence; Data mining; Evolutionary algorithms; Evolutionary computation; Fuzzy logic; Genetic algorithms; Machine learning; Microarray; Neural networks; Particle swarm optimization; Pattern recognition; Random forests; Rough sets; Soft computing; Support vector machines; Swarm intelligence

Mesh:

Year:  2016        PMID: 27592382     DOI: 10.1016/j.ymeth.2016.08.014

Source DB:  PubMed          Journal:  Methods        ISSN: 1046-2023            Impact factor:   3.608


  34 in total

1.  Comparison of variable selection methods for clinical predictive modeling.

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2.  Influence of feature rankers in the construction of molecular activity prediction models.

Authors:  Gonzalo Cerruela-García; José Pérez-Parra Toledano; Aída de Haro-García; Nicolás García-Pedrajas
Journal:  J Comput Aided Mol Des       Date:  2019-12-31       Impact factor: 3.686

3.  Network modeling of patients' biomolecular profiles for clinical phenotype/outcome prediction.

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Journal:  Sci Rep       Date:  2020-02-27       Impact factor: 4.379

4.  Identification of gene signatures for COAD using feature selection and Bayesian network approaches.

Authors:  Yangyang Wang; Xiaoguang Gao; Xinxin Ru; Pengzhan Sun; Jihan Wang
Journal:  Sci Rep       Date:  2022-05-24       Impact factor: 4.996

5.  Tumor-Infiltrating Lymphocytes and Their Role in Solid Tumor Progression.

Authors:  Theresa L Whiteside
Journal:  Exp Suppl       Date:  2022

6.  Partition: a surjective mapping approach for dimensionality reduction.

Authors:  Joshua Millstein; Francesca Battaglin; Malcolm Barrett; Shu Cao; Wu Zhang; Sebastian Stintzing; Volker Heinemann; Heinz-Josef Lenz
Journal:  Bioinformatics       Date:  2020-02-01       Impact factor: 6.937

7.  iFeatureOmega: an integrative platform for engineering, visualization and analysis of features from molecular sequences, structural and ligand data sets.

Authors:  Zhen Chen; Xuhan Liu; Pei Zhao; Chen Li; Yanan Wang; Fuyi Li; Tatsuya Akutsu; Chris Bain; Robin B Gasser; Junzhou Li; Zuoren Yang; Xin Gao; Lukasz Kurgan; Jiangning Song
Journal:  Nucleic Acids Res       Date:  2022-05-07       Impact factor: 19.160

8.  Prediction of cognitive and motor development in preterm children using exhaustive feature selection and cross-validation of near-term white matter microstructure.

Authors:  Kornél Schadl; Rachel Vassar; Katelyn Cahill-Rowley; Kristen W Yeom; David K Stevenson; Jessica Rose
Journal:  Neuroimage Clin       Date:  2017-11-29       Impact factor: 4.881

Review 9.  Biomedical Image Classification in a Big Data Architecture Using Machine Learning Algorithms.

Authors:  Christian Tchito Tchapga; Thomas Attia Mih; Aurelle Tchagna Kouanou; Theophile Fozin Fonzin; Platini Kuetche Fogang; Brice Anicet Mezatio; Daniel Tchiotsop
Journal:  J Healthc Eng       Date:  2021-05-30       Impact factor: 2.682

10.  Identifying diagnosis-specific genotype-phenotype associations via joint multitask sparse canonical correlation analysis and classification.

Authors:  Lei Du; Fang Liu; Kefei Liu; Xiaohui Yao; Shannon L Risacher; Junwei Han; Lei Guo; Andrew J Saykin; Li Shen
Journal:  Bioinformatics       Date:  2020-07-01       Impact factor: 6.937

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