Literature DB >> 27587631

Ebola Virus Disease Diagnostics, Sierra Leone: Analysis of Real-time Reverse Transcription-Polymerase Chain Reaction Values for Clinical Blood and Oral Swab Specimens.

Bobbie R Erickson1, Tara K Sealy1, Tim Flietstra1, Laura Morgan1, Brima Kargbo2, Victor E Matt-Lebby2, Aridth Gibbons1, Ayan K Chakrabarti1, James Graziano3, Lance Presser1, Mike Flint1, Brian H Bird1, Shelley Brown1, John D Klena4, Dianna M Blau5, Aaron C Brault6, Jessica A Belser7, Johanna S Salzer8, Amy J Schuh1, Michael Lo1, Marko Zivcec1, Rachael A Priestley9, Meredith Pyle10, Christin Goodman6, Scott Bearden11, Brian R Amman1, Alison Basile6, Éric Bergeron1, Michael D Bowen12, Kimberly A Dodd13, Molly M Freeman14, Laura K McMullan1, Christopher D Paddock9, Brandy J Russell6, Angela J Sanchez15, Jonathan S Towner1, David Wang7, Galina E Zemtsova9, Robyn A Stoddard3, Maryann Turnsek14, Lisa Wiggleton Guerrero1, Shannon L Emery16, Janae Stovall6, Markus H Kainulainen1, Jamie L Perniciaro9, Slavica Mijatovic-Rustempasic12, Gulchekhra Shakirova17, Jörn Winter16, Christopher Sexton11, Feng Liu7, Kimetha Slater9, Raydel Anderson18, Lauren Andersen19, Cheng-Feng Chiang1, Wen-Pin Tzeng7, Samuel J Crowe20, Matthew J Maenner21, Christina F Spiropoulou1, Stuart T Nichol1, Ute Ströher1.   

Abstract

During the Ebola virus outbreak of 2013-2016, the Viral Special Pathogens Branch field laboratory in Sierra Leone tested approximately 26 000 specimens between August 2014 and October 2015. Analysis of the B2M endogenous control Ct values showed its utility in monitoring specimen quality, comparing results with different specimen types, and interpretation of results. For live patients, blood is the most sensitive specimen type and oral swabs have little diagnostic utility. However, swabs are highly sensitive for diagnostic testing of corpses. Published by Oxford University Press for the Infectious Diseases Society of America 2016. This work is written by (a) US Government employee(s) and is in the public domain in the US.

Entities:  

Keywords:  Ebola virus; West Africa; endogenous control; housekeeping gene; qRT-PCR

Mesh：

Substances：

Year:  2016        PMID： 27587631      PMCID： PMC5769963          DOI： 10.1093/infdis/jiw296

Source DB:  PubMed          Journal:  J Infect Dis        ISSN： 0022-1899            Impact factor:   5.226


  9 in total

1.  Detection of Ebola virus in oral fluid specimens during outbreaks of Ebola virus hemorrhagic fever in the Republic of Congo.

Authors:  Pierre Formenty; Eric Maurice Leroy; Alain Epelboin; Francois Libama; Marco Lenzi; Hinrich Sudeck; Philippe Yaba; Yokouidé Allarangar; Paul Boumandouki; Virginot Blad Nkounkou; Christian Drosten; Allen Grolla; Heinz Feldmann; Cathy Roth
Journal:  Clin Infect Dis       Date:  2006-04-26       Impact factor: 9.079

2.  Effect of saliva stabilisers on detection of porcine reproductive and respiratory syndrome virus in oral fluid by quantitative reverse transcriptase real-time PCR.

Authors:  Inge Decorte; Yves Van der Stede; Hans Nauwynck; Nick De Regge; Ann Brigitte Cay
Journal:  Vet J       Date:  2013-03-13       Impact factor: 2.688

3.  Ebola Virus Diagnostics: The US Centers for Disease Control and Prevention Laboratory in Sierra Leone, August 2014 to March 2015.

Authors:  Mike Flint; Christin H Goodman; Scott Bearden; Dianna M Blau; Brian R Amman; Alison J Basile; Jessica A Belser; Éric Bergeron; Michael D Bowen; Aaron C Brault; Shelley Campbell; Ayan K Chakrabarti; Kimberly A Dodd; Bobbie R Erickson; Molly M Freeman; Aridth Gibbons; Lisa W Guerrero; John D Klena; R Ryan Lash; Michael K Lo; Laura K McMullan; Gbetuwa Momoh; James L Massally; Augustine Goba; Christopher D Paddock; Rachael A Priestley; Meredith Pyle; Mark Rayfield; Brandy J Russell; Johanna S Salzer; Angela J Sanchez; Amy J Schuh; Tara K Sealy; Martin Steinau; Robyn A Stoddard; Céline Taboy; Maryann Turnsek; David Wang; Galina E Zemtsova; Marko Zivcec; Christina F Spiropoulou; Ute Ströher; Jonathan S Towner; Stuart T Nichol; Brian H Bird
Journal:  J Infect Dis       Date:  2015-07-30       Impact factor: 5.226

4.  Rapid diagnosis of Ebola hemorrhagic fever by reverse transcription-PCR in an outbreak setting and assessment of patient viral load as a predictor of outcome.

Authors:  Jonathan S Towner; Pierre E Rollin; Daniel G Bausch; Anthony Sanchez; Sharon M Crary; Martin Vincent; William F Lee; Christina F Spiropoulou; Thomas G Ksiazek; Mathew Lukwiya; Felix Kaducu; Robert Downing; Stuart T Nichol
Journal:  J Virol       Date:  2004-04       Impact factor: 5.103

5.  The use of a mobile laboratory unit in support of patient management and epidemiological surveillance during the 2005 Marburg Outbreak in Angola.

Authors:  Allen Grolla; Steven M Jones; Lisa Fernando; James E Strong; Ute Ströher; Peggy Möller; Janusz T Paweska; Felicity Burt; Pedro Pablo Palma; Armand Sprecher; Pierre Formenty; Cathy Roth; Heinz Feldmann
Journal:  PLoS Negl Trop Dis       Date:  2011-05-24

6.  Postmortem stability of Ebola virus.

Authors:  Joseph Prescott; Trenton Bushmaker; Robert Fischer; Kerri Miazgowicz; Seth Judson; Vincent J Munster
Journal:  Emerg Infect Dis       Date:  2015-05       Impact factor: 6.883

7.  Utility of Oral Swab Sampling for Ebola Virus Detection in Guinea Pig Model.

Authors:  Jessica R Spengler; Ayan K Chakrabarti; JoAnn D Coleman-McCray; Brock E Martin; Stuart T Nichol; Christina F Spiropoulou; Brian H Bird
Journal:  Emerg Infect Dis       Date:  2015-10       Impact factor: 6.883

8.  Ebola Virus RNA Stability in Human Blood and Urine in West Africa's Environmental Conditions.

Authors:  Frédéric Janvier; Deborah Delaune; Thomas Poyot; Eric Valade; Audrey Mérens; Pierre E Rollin; Vincent Foissaud
Journal:  Emerg Infect Dis       Date:  2016-02       Impact factor: 6.883

9.  Prognostic Indicators for Ebola Patient Survival.

Authors:  Samuel J Crowe; Matthew J Maenner; Solomon Kuah; Bobbie Rae Erickson; Megan Coffee; Barbara Knust; John Klena; Joyce Foday; Darren Hertz; Veerle Hermans; Jay Achar; Grazia M Caleo; Michel Van Herp; César G Albariño; Brian Amman; Alison Jane Basile; Scott Bearden; Jessica A Belser; Eric Bergeron; Dianna Blau; Aaron C Brault; Shelley Campbell; Mike Flint; Aridth Gibbons; Christin Goodman; Laura McMullan; Christopher Paddock; Brandy Russell; Johanna S Salzer; Angela Sanchez; Tara Sealy; David Wang; Gbessay Saffa; Alhajie Turay; Stuart T Nichol; Jonathan S Towner
Journal:  Emerg Infect Dis       Date:  2016-02       Impact factor: 6.883
  9 in total
  9 in total

1.  Ebola RNA Persistence in Semen of Ebola Virus Disease Survivors - Final Report.

Authors:  Gibrilla F Deen; Nathalie Broutet; Wenbo Xu; Barbara Knust; Foday R Sesay; Suzanna L R McDonald; Elizabeth Ervin; Jaclyn E Marrinan; Philippe Gaillard; Ndema Habib; Hongtu Liu; William Liu; Anna E Thorson; Francis Yamba; Thomas A Massaquoi; Faustin James; Archchun Ariyarajah; Christine Ross; Kyle Bernstein; Antoine Coursier; John Klena; Marylin Carino; Alie H Wurie; Yong Zhang; Marion S Dumbuya; Neetu Abad; Baimba Idriss; Teodora Wi; Sarah D Bennett; Tina Davies; Faiqa K Ebrahim; Elissa Meites; Dhamari Naidoo; Samuel J Smith; Patricia Ongpin; Tasneem Malik; Anshu Banerjee; Bobbie R Erickson; Yongjian Liu; Yang Liu; Ke Xu; Aaron Brault; Kara N Durski; Jörn Winter; Tara Sealy; Stuart T Nichol; Margaret Lamunu; James Bangura; Sihem Landoulsi; Amara Jambai; Oliver Morgan; Guizhen Wu; Mifang Liang; Qiudong Su; Yu Lan; Yanzhe Hao; Pierre Formenty; Ute Ströher; Foday Sahr
Journal:  N Engl J Med       Date:  2015-10-14       Impact factor: 91.245

2.  A sensitive and specific point-of-care detection assay for Zaire Ebola virus.

Authors:  Xiao-Ai Zhang; Sabrina Li; Jesus Ching; Hui-Ying Feng; Kun Yang; David L Dolinger; Long-Di Zhang; Pan-He Zhang; Wei Liu; Wu-Chun Cao
Journal:  Emerg Microbes Infect       Date:  2017-01-18       Impact factor: 7.163

3.  Establishing Ebola Virus Disease (EVD) diagnostics using GeneXpert technology at a mobile laboratory in Liberia: Impact on outbreak response, case management and laboratory systems strengthening.

Authors:  Philomena Raftery; Orla Condell; Christine Wasunna; Jonathan Kpaka; Ruth Zwizwai; Mahmood Nuha; Mosoka Fallah; Maxwell Freeman; Victoria Harris; Mark Miller; April Baller; Moses Massaquoi; Victoria Katawera; John Saindon; Philip Bemah; Esther Hamblion; Evelyn Castle; Desmond Williams; Alex Gasasira; Tolbert Nyenswah
Journal:  PLoS Negl Trop Dis       Date:  2018-01-05

4.  Introduction of Ebola virus into a remote border district of Sierra Leone, 2014: use of field epidemiology and RNA sequencing to describe chains of transmission.

Authors:  M B DeSilva; T Styles; C Basler; F L Moses; F Husain; M Reichler; S Whitmer; J McAuley; E Belay; M Friedman; I S Muoghalu; P Swaray; U Ströher; J T Redd
Journal:  Epidemiol Infect       Date:  2019-01       Impact factor: 2.451

5.  Persistence of Ebola virus in semen among Ebola virus disease survivors in Sierra Leone: A cohort study of frequency, duration, and risk factors.

Authors:  A E Thorson; G F Deen; K T Bernstein; W J Liu; F Yamba; N Habib; F R Sesay; P Gaillard; T A Massaquoi; S L R McDonald; Y Zhang; K N Durski; S Singaravelu; E Ervin; H Liu; A Coursier; J E Marrinan; A Ariyarajah; M Carino; P Formenty; U Ströher; M Lamunu; G Wu; F Sahr; W Xu; B Knust; N Broutet
Journal:  PLoS Med       Date:  2021-02-10       Impact factor: 11.069

6.  Characterization of Ebola Virus Risk to Bedside Providers in an Intensive Care Environment.

Authors:  Mia J Biondi; Lauren Garnett; Alexander Bello; Duane Funk; Philippe Guillaume Poliquin; Shane Jones; Kevin Tierney; Kaylie Tran; Robert A Kozak; Anders Leung; Allen Grolla; Cory Nakamura; Geoff Soule; Charlene Ranadheera; Mable Hagan; Amrinder Dhaliwal; Darwyn Kobasa; Darryl Falzarano; Hugues Fausther Bovendo; Heinz Feldmann; Murray Kesselman; Gregory Hansen; Jason Gren; Todd Mortimer; Trina Racine; Yvon Deschambault; Jocelyn Edmonds; Sam Aminian; Ray Saurette; Mark Allan; Lauren Rondeau; John Huynh; Sharron Hadder; Christy Press; Christine DeGraff; Stephanie Kucas; Julie Kubay; Kimberly Azanarsky; Bradley W M Cook; B J Hancock; Anand Kumar; Reeni Soni; Daryl Schantz; Jarrid McKitrick; Bryce Warner; Bryan D Griffin; Xiangguo Qiu; Gary P Kobinger; Dave Safronetz; Heidi Wood; Derek R Stein; Todd Cutts; Brad Pickering; James Kenny; Steven Theriault; Liam Menec; Robert Vendramelli; Sean Higgins; Logan Banadyga; Guodong Liu; Md Niaz Rahim; Samantha Kasloff; Angela Sloan; Shihua He; Nikesh Tailor; Alixandra Albietz; Gary Wong; Michael Gray; Friederike Feldmann; Andrea Marzi; George Risi; James E Strong
Journal:  Microorganisms       Date:  2021-02-26

Review 7.  Ebola virus disease.

Authors:  Shevin T Jacob; Ian Crozier; William A Fischer; Angela Hewlett; Colleen S Kraft; Marc-Antoine de La Vega; Moses J Soka; Victoria Wahl; Anthony Griffiths; Laura Bollinger; Jens H Kuhn
Journal:  Nat Rev Dis Primers       Date:  2020-02-20       Impact factor: 52.329

8.  Oral swab testing by Xpert® MTB/RIF Ultra for mass tuberculosis screening in prisons.

Authors:  Fabiano Lima; Andrea S Santos; Roberto D Oliveira; Carla C R Silva; Crhistinne C M Gonçalves; Jason R Andrews; Julio Croda
Journal:  J Clin Tuberc Other Mycobact Dis       Date:  2020-02-04

9.  Sample adequacy controls for infectious disease diagnosis by oral swabbing.

Authors:  Meagan Deviaene; Kris M Weigel; Rachel C Wood; Angelique K K Luabeya; Lisa Jones-Engel; Mark Hatherill; Gerard A Cangelosi
Journal:  PLoS One       Date:  2020-10-30       Impact factor: 3.240
  9 in total

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