Literature DB >> 27584858

Human adaptation and evolution by segmental duplication.

Megan Y Dennis1, Evan E Eichler2.   

Abstract

Duplications are the primary force by which new gene functions arise and provide a substrate for large-scale structural variation. Analysis of thousands of genomes shows that humans and great apes have more genetic differences in content and structure over recent segmental duplications than any other euchromatic region. Novel human-specific duplicated genes, ARHGAP11B and SRGAP2C, have recently been described with a potential role in neocortical expansion and increased neuronal spine density. Large segmental duplications and the structural variants they promote are also frequently stratified between human populations with a subset being subjected to positive selection. The impact of recent duplications on human evolution and adaptation is only beginning to be realized as new technologies enhance their discovery and accurate genotyping.
Copyright © 2016 Elsevier Ltd. All rights reserved.

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Year:  2016        PMID: 27584858      PMCID: PMC5161654          DOI: 10.1016/j.gde.2016.08.001

Source DB:  PubMed          Journal:  Curr Opin Genet Dev        ISSN: 0959-437X            Impact factor:   5.578


  61 in total

1.  Discovery of previously unidentified genomic disorders from the duplication architecture of the human genome.

Authors:  Andrew J Sharp; Sierra Hansen; Rebecca R Selzer; Ze Cheng; Regina Regan; Jane A Hurst; Helen Stewart; Sue M Price; Edward Blair; Raoul C Hennekam; Carrie A Fitzpatrick; Rick Segraves; Todd A Richmond; Cheryl Guiver; Donna G Albertson; Daniel Pinkel; Peggy S Eis; Stuart Schwartz; Samantha J L Knight; Evan E Eichler
Journal:  Nat Genet       Date:  2006-08-13       Impact factor: 38.330

2.  The human alpha-amylase multigene family consists of haplotypes with variable numbers of genes.

Authors:  P C Groot; M J Bleeker; J C Pronk; F Arwert; W H Mager; R J Planta; A W Eriksson; R R Frants
Journal:  Genomics       Date:  1989-07       Impact factor: 5.736

3.  Mutations in the chromatin modifier gene KANSL1 cause the 17q21.31 microdeletion syndrome.

Authors:  David A Koolen; Jamie M Kramer; Kornelia Neveling; Willy M Nillesen; Heather L Moore-Barton; Frances V Elmslie; Annick Toutain; Jeanne Amiel; Valérie Malan; Anne Chun-Hui Tsai; Sau Wai Cheung; Christian Gilissen; Eugene T P Verwiel; Sarah Martens; Ton Feuth; Ernie M H F Bongers; Petra de Vries; Hans Scheffer; Lisenka E L M Vissers; Arjan P M de Brouwer; Han G Brunner; Joris A Veltman; Annette Schenck; Helger G Yntema; Bert B A de Vries
Journal:  Nat Genet       Date:  2012-04-29       Impact factor: 38.330

4.  Diet and the evolution of human amylase gene copy number variation.

Authors:  George H Perry; Nathaniel J Dominy; Katrina G Claw; Arthur S Lee; Heike Fiegler; Richard Redon; John Werner; Fernando A Villanea; Joanna L Mountain; Rajeev Misra; Nigel P Carter; Charles Lee; Anne C Stone
Journal:  Nat Genet       Date:  2007-09-09       Impact factor: 38.330

5.  Copy number variation and evolution in humans and chimpanzees.

Authors:  George H Perry; Fengtang Yang; Tomas Marques-Bonet; Carly Murphy; Tomas Fitzgerald; Arthur S Lee; Courtney Hyland; Anne C Stone; Matthew E Hurles; Chris Tyler-Smith; Evan E Eichler; Nigel P Carter; Charles Lee; Richard Redon
Journal:  Genome Res       Date:  2008-09-04       Impact factor: 9.043

6.  Evolutionary dynamism of the primate LRRC37 gene family.

Authors:  Giuliana Giannuzzi; Priscillia Siswara; Maika Malig; Tomas Marques-Bonet; James C Mullikin; Mario Ventura; Evan E Eichler
Journal:  Genome Res       Date:  2012-10-11       Impact factor: 9.043

7.  Large multiallelic copy number variations in humans.

Authors:  Robert E Handsaker; Vanessa Van Doren; Jennifer R Berman; Giulio Genovese; Seva Kashin; Linda M Boettger; Steven A McCarroll
Journal:  Nat Genet       Date:  2015-01-26       Impact factor: 38.330

8.  Structural forms of the human amylase locus and their relationships to SNPs, haplotypes and obesity.

Authors:  Christina L Usher; Robert E Handsaker; Tõnu Esko; Marcus A Tuke; Michael N Weedon; Alex R Hastie; Han Cao; Jennifer E Moon; Seva Kashin; Christian Fuchsberger; Andres Metspalu; Carlos N Pato; Michele T Pato; Mark I McCarthy; Michael Boehnke; David M Altshuler; Timothy M Frayling; Joel N Hirschhorn; Steven A McCarroll
Journal:  Nat Genet       Date:  2015-06-22       Impact factor: 38.330

9.  Large recurrent microdeletions associated with schizophrenia.

Authors:  Hreinn Stefansson; Dan Rujescu; Sven Cichon; Olli P H Pietiläinen; Andres Ingason; Stacy Steinberg; Ragnheidur Fossdal; Engilbert Sigurdsson; Thordur Sigmundsson; Jacobine E Buizer-Voskamp; Thomas Hansen; Klaus D Jakobsen; Pierandrea Muglia; Clyde Francks; Paul M Matthews; Arnaldur Gylfason; Bjarni V Halldorsson; Daniel Gudbjartsson; Thorgeir E Thorgeirsson; Asgeir Sigurdsson; Adalbjorg Jonasdottir; Aslaug Jonasdottir; Asgeir Bjornsson; Sigurborg Mattiasdottir; Thorarinn Blondal; Magnus Haraldsson; Brynja B Magnusdottir; Ina Giegling; Hans-Jürgen Möller; Annette Hartmann; Kevin V Shianna; Dongliang Ge; Anna C Need; Caroline Crombie; Gillian Fraser; Nicholas Walker; Jouko Lonnqvist; Jaana Suvisaari; Annamarie Tuulio-Henriksson; Tiina Paunio; Timi Toulopoulou; Elvira Bramon; Marta Di Forti; Robin Murray; Mirella Ruggeri; Evangelos Vassos; Sarah Tosato; Muriel Walshe; Tao Li; Catalina Vasilescu; Thomas W Mühleisen; August G Wang; Henrik Ullum; Srdjan Djurovic; Ingrid Melle; Jes Olesen; Lambertus A Kiemeney; Barbara Franke; Chiara Sabatti; Nelson B Freimer; Jeffrey R Gulcher; Unnur Thorsteinsdottir; Augustine Kong; Ole A Andreassen; Roel A Ophoff; Alexander Georgi; Marcella Rietschel; Thomas Werge; Hannes Petursson; David B Goldstein; Markus M Nöthen; Leena Peltonen; David A Collier; David St Clair; Kari Stefansson
Journal:  Nature       Date:  2008-09-11       Impact factor: 49.962

10.  Refining analyses of copy number variation identifies specific genes associated with developmental delay.

Authors:  Bradley P Coe; Kali Witherspoon; Jill A Rosenfeld; Bregje W M van Bon; Anneke T Vulto-van Silfhout; Paolo Bosco; Kathryn L Friend; Carl Baker; Serafino Buono; Lisenka E L M Vissers; Janneke H Schuurs-Hoeijmakers; Alex Hoischen; Rolph Pfundt; Nik Krumm; Gemma L Carvill; Deana Li; David Amaral; Natasha Brown; Paul J Lockhart; Ingrid E Scheffer; Antonino Alberti; Marie Shaw; Rosa Pettinato; Raymond Tervo; Nicole de Leeuw; Margot R F Reijnders; Beth S Torchia; Hilde Peeters; Brian J O'Roak; Marco Fichera; Jayne Y Hehir-Kwa; Jay Shendure; Heather C Mefford; Eric Haan; Jozef Gécz; Bert B A de Vries; Corrado Romano; Evan E Eichler
Journal:  Nat Genet       Date:  2014-09-14       Impact factor: 38.330

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  59 in total

1.  Comparative genomic analysis of collagen gene diversity.

Authors:  Farhan Haq; Nabeel Ahmed; Muhammad Qasim
Journal:  3 Biotech       Date:  2019-02-14       Impact factor: 2.406

2.  De novo single-nucleotide and copy number variation in discordant monozygotic twins reveals disease-related genes.

Authors:  Nirmal Vadgama; Alan Pittman; Michael Simpson; Niranjanan Nirmalananthan; Robin Murray; Takeo Yoshikawa; Peter De Rijk; Elliott Rees; George Kirov; Deborah Hughes; Tomas Fitzgerald; Mark Kristiansen; Kerra Pearce; Eliza Cerveira; Qihui Zhu; Chengsheng Zhang; Charles Lee; John Hardy; Jamal Nasir
Journal:  Eur J Hum Genet       Date:  2019-03-18       Impact factor: 4.246

Review 3.  Border collies of the genome: domestication of an autonomous retrovirus-like transposon.

Authors:  M Joan Curcio
Journal:  Curr Genet       Date:  2018-06-21       Impact factor: 3.886

Review 4.  Gene conversion generates evolutionary novelty that fuels genetic conflicts.

Authors:  Matthew D Daugherty; Sarah E Zanders
Journal:  Curr Opin Genet Dev       Date:  2019-08-26       Impact factor: 5.578

5.  Genomics at cellular resolution: insights into cognitive disorders and their evolution.

Authors:  Stefano Berto; Yuxiang Liu; Genevieve Konopka
Journal:  Hum Mol Genet       Date:  2020-09-30       Impact factor: 6.150

Review 6.  Substitutions Are Boring: Some Arguments about Parallel Mutations and High Mutation Rates.

Authors:  Maximilian Oliver Press; Ashley N Hall; Elizabeth A Morton; Christine Queitsch
Journal:  Trends Genet       Date:  2019-02-20       Impact factor: 11.639

7.  Whole genome sequencing predicts novel human disease models in rhesus macaques.

Authors:  Benjamin N Bimber; Ranjani Ramakrishnan; Rita Cervera-Juanes; Ravi Madhira; Samuel M Peterson; Robert B Norgren; Betsy Ferguson
Journal:  Genomics       Date:  2017-04-23       Impact factor: 5.736

8.  Natural human genetic variation determines basal and inducible expression of PM20D1, an obesity-associated gene.

Authors:  Kiara K Benson; Wenxiang Hu; Angela H Weller; Alexis H Bennett; Eric R Chen; Sumeet A Khetarpal; Satoshi Yoshino; William P Bone; Lin Wang; Joshua D Rabinowitz; Benjamin F Voight; Raymond E Soccio
Journal:  Proc Natl Acad Sci U S A       Date:  2019-10-28       Impact factor: 11.205

9.  Human-Specific NOTCH2NL Genes Affect Notch Signaling and Cortical Neurogenesis.

Authors:  Ian T Fiddes; Gerrald A Lodewijk; Meghan Mooring; Colleen M Bosworth; Adam D Ewing; Gary L Mantalas; Adam M Novak; Anouk van den Bout; Alex Bishara; Jimi L Rosenkrantz; Ryan Lorig-Roach; Andrew R Field; Maximilian Haeussler; Lotte Russo; Aparna Bhaduri; Tomasz J Nowakowski; Alex A Pollen; Max L Dougherty; Xander Nuttle; Marie-Claude Addor; Simon Zwolinski; Sol Katzman; Arnold Kriegstein; Evan E Eichler; Sofie R Salama; Frank M J Jacobs; David Haussler
Journal:  Cell       Date:  2018-05-31       Impact factor: 41.582

Review 10.  Evolution, Emotion, and Episodic Engagement.

Authors:  Daniel S Pine; Steven P Wise; Elisabeth A Murray
Journal:  Am J Psychiatry       Date:  2021-06-03       Impact factor: 18.112

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