Literature DB >> 27583642

A screening-based platform for the assessment of cellular respiration in Caenorhabditis elegans.

Mandy Koopman1, Helen Michels1, Beverley M Dancy2, Rashmi Kamble3, Laurent Mouchiroud4, Johan Auwerx4, Ellen A A Nollen1, Riekelt H Houtkooper3.   

Abstract

Mitochondrial dysfunction is at the core of many diseases ranging from inherited metabolic diseases to common conditions that are associated with aging. Although associations between aging and mitochondrial function have been identified using mammalian models, much of the mechanistic insight has emerged from Caenorhabditis elegans. Mitochondrial respiration is recognized as an indicator of mitochondrial health. The Seahorse XF96 respirometer represents the state-of-the-art platform for assessing respiration in cells, and we adapted the technique for applications involving C. elegans. Here we provide a detailed protocol to optimize and measure respiration in C. elegans with the XF96 respirometer, including the interpretation of parameters and results. The protocol takes ∼2 d to complete, excluding the time spent culturing C. elegans, and it includes (i) the preparation of C. elegans samples, (ii) selection and loading of compounds to be injected, (iii) preparation and execution of a run with the XF96 respirometer and (iv) postexperimental data analysis, including normalization. In addition, we compare our XF96 application with other existing techniques, including the eight-well Seahorse XFp. The main benefits of the XF96 include the limited number of worms required and the high throughput capacity due to the 96-well format.

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Mesh:

Year:  2016        PMID: 27583642      PMCID: PMC5040492          DOI: 10.1038/nprot.2016.106

Source DB:  PubMed          Journal:  Nat Protoc        ISSN: 1750-2799            Impact factor:   13.491


  73 in total

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2.  Multiparameter metabolic analysis reveals a close link between attenuated mitochondrial bioenergetic function and enhanced glycolysis dependency in human tumor cells.

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Review 3.  Maintenance of C. elegans.

Authors:  Theresa Stiernagle
Journal:  WormBook       Date:  2006-02-11

4.  Comprehensive measurement of respiratory activity in permeabilized cells using extracellular flux analysis.

Authors:  Joshua K Salabei; Andrew A Gibb; Bradford G Hill
Journal:  Nat Protoc       Date:  2014-01-23       Impact factor: 13.491

5.  Fluorodeoxyuridine affects the identification of metabolic responses to daf-2 status in Caenorhabditis elegans.

Authors:  Sarah K Davies; Armand M Leroi; Jacob G Bundy
Journal:  Mech Ageing Dev       Date:  2011-11-17       Impact factor: 5.432

6.  A high-throughput method for assessing chemical toxicity using a Caenorhabditis elegans reproduction assay.

Authors:  Windy A Boyd; Sandra J McBride; Julie R Rice; Daniel W Snyder; Jonathan H Freedman
Journal:  Toxicol Appl Pharmacol       Date:  2010-03-04       Impact factor: 4.219

7.  Assessing bioenergetic function in response to oxidative stress by metabolic profiling.

Authors:  Brian P Dranka; Gloria A Benavides; Anne R Diers; Samantha Giordano; Blake R Zelickson; Colin Reily; Luyun Zou; John C Chatham; Bradford G Hill; Jianhua Zhang; Aimee Landar; Victor M Darley-Usmar
Journal:  Free Radic Biol Med       Date:  2011-08-16       Impact factor: 7.376

8.  A predictive model for drug bioaccumulation and bioactivity in Caenorhabditis elegans.

Authors:  Andrew R Burns; Iain M Wallace; Jan Wildenhain; Mike Tyers; Guri Giaever; Gary D Bader; Corey Nislow; Sean R Cutler; Peter J Roy
Journal:  Nat Chem Biol       Date:  2010-05-30       Impact factor: 15.040

Review 9.  Mitochondrial dysfunction and intracellular calcium dysregulation in ALS.

Authors:  Hibiki Kawamata; Giovanni Manfredi
Journal:  Mech Ageing Dev       Date:  2010-05-20       Impact factor: 5.432

10.  Drug absorption efficiency in Caenorhbditis elegans delivered by different methods.

Authors:  Shan-Qing Zheng; Ai-Jun Ding; Guo-Ping Li; Gui-Sheng Wu; Huai-Rong Luo
Journal:  PLoS One       Date:  2013-02-25       Impact factor: 3.240

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  45 in total

1.  A novel ex vivo method for measuring whole brain metabolism in model systems.

Authors:  Kathryn E Neville; Timothy L Bosse; Mia Klekos; John F Mills; Steven E Weicksel; James S Waters; Marla Tipping
Journal:  J Neurosci Methods       Date:  2017-12-26       Impact factor: 2.390

2.  Measurement of Oxygen Consumption Rates in Intact Caenorhabditis elegans.

Authors:  Shaarika Sarasija; Kenneth R Norman
Journal:  J Vis Exp       Date:  2019-02-23       Impact factor: 1.355

3.  Loss of metabolic plasticity underlies metformin toxicity in aged Caenorhabditis elegans.

Authors:  Lilia Espada; Alexander Dakhovnik; Prerana Chaudhari; Asya Martirosyan; Laura Miek; Tetiana Poliezhaieva; Yvonne Schaub; Ashish Nair; Nadia Döring; Norman Rahnis; Oliver Werz; Andreas Koeberle; Joanna Kirkpatrick; Alessandro Ori; Maria A Ermolaeva
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4.  Assessing motor-related phenotypes of Caenorhabditis elegans with the wide field-of-view nematode tracking platform.

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Journal:  Nat Protoc       Date:  2020-05-20       Impact factor: 13.491

Review 5.  Neuroendocrine control of lipid metabolism: lessons from C. elegans.

Authors:  Supriya Srinivasan
Journal:  J Neurogenet       Date:  2020-07-03       Impact factor: 1.250

6.  Asymmetric Arginine Dimethylation Modulates Mitochondrial Energy Metabolism and Homeostasis in Caenorhabditis elegans.

Authors:  Liang Sha; Hiroaki Daitoku; Sho Araoi; Yuta Kaneko; Yuta Takahashi; Koichiro Kako; Akiyoshi Fukamizu
Journal:  Mol Cell Biol       Date:  2017-03-01       Impact factor: 4.272

7.  Astaxanthin attenuates the increase in mitochondrial respiration during the activation of hepatic stellate cells.

Authors:  Minkyung Bae; Yoojin Lee; Young-Ki Park; Dong-Guk Shin; Pujan Joshi; Seung-Hyun Hong; Nathan Alder; Sung I Koo; Ji-Young Lee
Journal:  J Nutr Biochem       Date:  2019-06-20       Impact factor: 6.048

8.  Evaluations of Environmental Pollutant-Induced Mitochondrial Toxicity Using Caenorhabditis elegans as a Model System.

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Journal:  Methods Mol Biol       Date:  2021

9.  NFYB-1 regulates mitochondrial function and longevity via lysosomal prosaposin.

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Journal:  Nat Metab       Date:  2020-05-18

10.  A Conserved Mito-Cytosolic Translational Balance Links Two Longevity Pathways.

Authors:  Marte Molenaars; Georges E Janssens; Evan G Williams; Aldo Jongejan; Jiayi Lan; Sylvie Rabot; Fatima Joly; Perry D Moerland; Bauke V Schomakers; Marco Lezzerini; Yasmine J Liu; Mark A McCormick; Brian K Kennedy; Michel van Weeghel; Antoine H C van Kampen; Ruedi Aebersold; Alyson W MacInnes; Riekelt H Houtkooper
Journal:  Cell Metab       Date:  2020-02-20       Impact factor: 27.287

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