Literature DB >> 27580257

The future of NMR-based metabolomics.

John L Markley1, Rafael Brüschweiler2, Arthur S Edison3, Hamid R Eghbalnia4, Robert Powers5, Daniel Raftery6, David S Wishart7.   

Abstract

The two leading analytical approaches to metabolomics are mass spectrometry (MS) and nuclear magnetic resonance (NMR) spectroscopy. Although currently overshadowed by MS in terms of numbers of compounds resolved, NMR spectroscopy offers advantages both on its own and coupled with MS. NMR data are highly reproducible and quantitative over a wide dynamic range and are unmatched for determining structures of unknowns. NMR is adept at tracing metabolic pathways and fluxes using isotope labels. Moreover, NMR is non-destructive and can be utilized in vivo. NMR results have a proven track record of translating in vitro findings to in vivo clinical applications.
Copyright © 2016 The Author(s). Published by Elsevier Ltd.. All rights reserved.

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Year:  2016        PMID: 27580257      PMCID: PMC5305426          DOI: 10.1016/j.copbio.2016.08.001

Source DB:  PubMed          Journal:  Curr Opin Biotechnol        ISSN: 0958-1669            Impact factor:   9.740


  52 in total

Review 1.  Applications of NMR spectroscopy to systems biochemistry.

Authors:  Teresa W-M Fan; Andrew N Lane
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2016-02-06       Impact factor: 9.795

2.  Ratio analysis nuclear magnetic resonance spectroscopy for selective metabolite identification in complex samples.

Authors:  Siwei Wei; Jian Zhang; Lingyan Liu; Tao Ye; G A Nagana Gowda; Fariba Tayyari; Daniel Raftery
Journal:  Anal Chem       Date:  2011-09-23       Impact factor: 6.986

3.  15N-cholamine--a smart isotope tag for combining NMR- and MS-based metabolite profiling.

Authors:  Fariba Tayyari; G A Nagana Gowda; Haiwei Gu; Daniel Raftery
Journal:  Anal Chem       Date:  2013-08-26       Impact factor: 6.986

4.  Nanoparticle-Assisted Removal of Protein in Human Serum for Metabolomics Studies.

Authors:  Bo Zhang; Mouzhe Xie; Lei Bruschweiler-Li; Rafael Brüschweiler
Journal:  Anal Chem       Date:  2015-12-08       Impact factor: 6.986

5.  Accurate, fully-automated NMR spectral profiling for metabolomics.

Authors:  Siamak Ravanbakhsh; Philip Liu; Trent C Bjorndahl; Trent C Bjordahl; Rupasri Mandal; Jason R Grant; Michael Wilson; Roman Eisner; Igor Sinelnikov; Xiaoyu Hu; Claudio Luchinat; Russell Greiner; David S Wishart
Journal:  PLoS One       Date:  2015-05-27       Impact factor: 3.240

6.  Direct and cost-efficient hyperpolarization of long-lived nuclear spin states on universal (15)N2-diazirine molecular tags.

Authors:  Thomas Theis; Gerardo X Ortiz; Angus W J Logan; Kevin E Claytor; Yesu Feng; William P Huhn; Volker Blum; Steven J Malcolmson; Eduard Y Chekmenev; Qiu Wang; Warren S Warren
Journal:  Sci Adv       Date:  2016-03-25       Impact factor: 14.136

7.  COordination of Standards in MetabOlomicS (COSMOS): facilitating integrated metabolomics data access.

Authors:  Reza M Salek; Steffen Neumann; Daniel Schober; Jan Hummel; Kenny Billiau; Joachim Kopka; Elon Correa; Theo Reijmers; Antonio Rosato; Leonardo Tenori; Paola Turano; Silvia Marin; Catherine Deborde; Daniel Jacob; Dominique Rolin; Benjamin Dartigues; Pablo Conesa; Kenneth Haug; Philippe Rocca-Serra; Steve O'Hagan; Jie Hao; Michael van Vliet; Marko Sysi-Aho; Christian Ludwig; Jildau Bouwman; Marta Cascante; Timothy Ebbels; Julian L Griffin; Annick Moing; Macha Nikolski; Matej Oresic; Susanna-Assunta Sansone; Mark R Viant; Royston Goodacre; Ulrich L Günther; Thomas Hankemeier; Claudio Luchinat; Dirk Walther; Christoph Steinbeck
Journal:  Metabolomics       Date:  2015-05-26       Impact factor: 4.290

8.  Customized metabolomics database for the analysis of NMR ¹H-¹H TOCSY and ¹³C-¹H HSQC-TOCSY spectra of complex mixtures.

Authors:  Kerem Bingol; Lei Bruschweiler-Li; Da-Wei Li; Rafael Brüschweiler
Journal:  Anal Chem       Date:  2014-05-20       Impact factor: 6.986

9.  Alterations in energy/redox metabolism induced by mitochondrial and environmental toxins: a specific role for glucose-6-phosphate-dehydrogenase and the pentose phosphate pathway in paraquat toxicity.

Authors:  Shulei Lei; Laura Zavala-Flores; Aracely Garcia-Garcia; Renu Nandakumar; Yuting Huang; Nandakumar Madayiputhiya; Robert C Stanton; Eric D Dodds; Robert Powers; Rodrigo Franco
Journal:  ACS Chem Biol       Date:  2014-07-07       Impact factor: 5.100

10.  Simultaneous Analysis of Major Coenzymes of Cellular Redox Reactions and Energy Using ex Vivo (1)H NMR Spectroscopy.

Authors:  G A Nagana Gowda; Lauren Abell; Chi Fung Lee; Rong Tian; Daniel Raftery
Journal:  Anal Chem       Date:  2016-04-14       Impact factor: 6.986

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  198 in total

Review 1.  Applications of metabolomics to study cancer metabolism.

Authors:  Akash K Kaushik; Ralph J DeBerardinis
Journal:  Biochim Biophys Acta Rev Cancer       Date:  2018-04-25       Impact factor: 10.680

2.  Metabolite Structure Assignment Using In Silico NMR Techniques.

Authors:  Susanta Das; Arthur S Edison; Kenneth M Merz
Journal:  Anal Chem       Date:  2020-07-15       Impact factor: 6.986

3.  Comprehensive Metabolite Identification Strategy Using Multiple Two-Dimensional NMR Spectra of a Complex Mixture Implemented in the COLMARm Web Server.

Authors:  Kerem Bingol; Da-Wei Li; Bo Zhang; Rafael Brüschweiler
Journal:  Anal Chem       Date:  2016-12-06       Impact factor: 6.986

Review 4.  Illuminating the dark metabolome to advance the molecular characterisation of biological systems.

Authors:  Oliver A H Jones
Journal:  Metabolomics       Date:  2018-07-19       Impact factor: 4.290

Review 5.  Recent Advances in NMR-Based Metabolomics.

Authors:  G A Nagana Gowda; Daniel Raftery
Journal:  Anal Chem       Date:  2016-12-02       Impact factor: 6.986

Review 6.  NMR-based metabolomics studies of human prostate cancer tissue.

Authors:  Ana Rita Lima; Joana Pinto; Maria de Lourdes Bastos; Márcia Carvalho; Paula Guedes de Pinho
Journal:  Metabolomics       Date:  2018-06-18       Impact factor: 4.290

7.  Real-Time Pure Shift HSQC NMR for Untargeted Metabolomics.

Authors:  István Timári; Cheng Wang; Alexandar L Hansen; Gilson Costa Dos Santos; Sung Ok Yoon; Lei Bruschweiler-Li; Rafael Brüschweiler
Journal:  Anal Chem       Date:  2019-01-16       Impact factor: 6.986

Review 8.  Metabolomics and Isotope Tracing.

Authors:  Cholsoon Jang; Li Chen; Joshua D Rabinowitz
Journal:  Cell       Date:  2018-05-03       Impact factor: 41.582

Review 9.  A review of applications of metabolomics in osteoarthritis.

Authors:  Jie-Ting Li; Ni Zeng; Zhi-Peng Yan; Tao Liao; Guo-Xin Ni
Journal:  Clin Rheumatol       Date:  2020-11-20       Impact factor: 2.980

Review 10.  Metabolomics study of oral cancers.

Authors:  Xun Chen; Dongsheng Yu
Journal:  Metabolomics       Date:  2019-02-08       Impact factor: 4.290

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