Literature DB >> 27573684

Pairs of promoter pairs in a web of transcription.

Craig D Kaplan1.   

Abstract

A new analysis has characterized a fundamental building block of complex transcribed loci. Constellations of core promoters can generally be reduced to pairs of divergent transcription units, where the distance between the pairs of transcription units correlates with constraints on genomic context, which in turn contribute to transcript fate.

Mesh：

Year:  2016        PMID： 27573684     DOI： 10.1038/ng.3649

Source DB:  PubMed          Journal:  Nat Genet        ISSN： 1061-4036            Impact factor:   38.330


  11 in total

1.  Perspectives on Unidirectional versus Divergent Transcription.

Authors:  Sascha H C Duttke; Scott A Lacadie; Mahmoud M Ibrahim; Christopher K Glass; David L Corcoran; Christopher Benner; Sven Heinz; James T Kadonaga; Uwe Ohler
Journal:  Mol Cell       Date:  2015-11-05       Impact factor: 17.970

2.  Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters.

Authors:  Leighton J Core; Joshua J Waterfall; John T Lis
Journal:  Science       Date:  2008-12-04       Impact factor: 47.728

3.  Polyadenylation site-induced decay of upstream transcripts enforces promoter directionality.

Authors:  Evgenia Ntini; Aino I Järvelin; Jette Bornholdt; Yun Chen; Mette Boyd; Mette Jørgensen; Robin Andersson; Ilka Hoof; Aleks Schein; Peter R Andersen; Pia K Andersen; Pascal Preker; Eivind Valen; Xiaobei Zhao; Vicent Pelechano; Lars M Steinmetz; Albin Sandelin; Torben Heick Jensen
Journal:  Nat Struct Mol Biol       Date:  2013-07-14       Impact factor: 15.369

4.  Human promoters are intrinsically directional.

Authors:  Sascha H C Duttke; Scott A Lacadie; Mahmoud M Ibrahim; Christopher K Glass; David L Corcoran; Christopher Benner; Sven Heinz; James T Kadonaga; Uwe Ohler
Journal:  Mol Cell       Date:  2015-01-29       Impact factor: 17.970

5.  Analysis of nascent RNA identifies a unified architecture of initiation regions at mammalian promoters and enhancers.

Authors:  Leighton J Core; André L Martins; Charles G Danko; Colin T Waters; Adam Siepel; John T Lis
Journal:  Nat Genet       Date:  2014-11-10       Impact factor: 38.330

6.  Native elongating transcript sequencing reveals human transcriptional activity at nucleotide resolution.

Authors:  Andreas Mayer; Julia di Iulio; Seth Maleri; Umut Eser; Jeff Vierstra; Alex Reynolds; Richard Sandstrom; John A Stamatoyannopoulos; L Stirling Churchman
Journal:  Cell       Date:  2015-04-23       Impact factor: 41.582

7.  Divergent transcription from active promoters.

Authors:  Amy C Seila; J Mauro Calabrese; Stuart S Levine; Gene W Yeo; Peter B Rahl; Ryan A Flynn; Richard A Young; Phillip A Sharp
Journal:  Science       Date:  2008-12-04       Impact factor: 47.728

8.  Human Gene Promoters Are Intrinsically Bidirectional.

Authors:  Robin Andersson; Yun Chen; Leighton Core; John T Lis; Albin Sandelin; Torben Heick Jensen
Journal:  Mol Cell       Date:  2015-11-05       Impact factor: 17.970

9.  Promoter directionality is controlled by U1 snRNP and polyadenylation signals.

Authors:  Albert E Almada; Xuebing Wu; Andrea J Kriz; Christopher B Burge; Phillip A Sharp
Journal:  Nature       Date:  2013-06-23       Impact factor: 49.962

10.  Principles for RNA metabolism and alternative transcription initiation within closely spaced promoters.

Authors:  Yun Chen; Athma A Pai; Jan Herudek; Michal Lubas; Nicola Meola; Aino I Järvelin; Robin Andersson; Vicent Pelechano; Lars M Steinmetz; Torben Heick Jensen; Albin Sandelin
Journal:  Nat Genet       Date:  2016-07-25       Impact factor: 38.330
View more
  4 in total

1.  Mot1, Ino80C, and NC2 Function Coordinately to Regulate Pervasive Transcription in Yeast and Mammals.

Authors:  Yong Xue; Suman K Pradhan; Fei Sun; Constantinos Chronis; Nancy Tran; Trent Su; Christopher Van; Ajay Vashisht; James Wohlschlegel; Craig L Peterson; H T Marc Timmers; Siavash K Kurdistani; Michael F Carey
Journal:  Mol Cell       Date:  2017-07-20       Impact factor: 17.970

Review 2.  Emerging roles of transcriptional enhancers in chromatin looping and promoter-proximal pausing of RNA polymerase II.

Authors:  Huan Meng; Blaine Bartholomew
Journal:  J Biol Chem       Date:  2017-11-29       Impact factor: 5.157

3.  Ssl2/TFIIH function in transcription start site scanning by RNA polymerase II in Saccharomyces cerevisiae.

Authors:  Tingting Zhao; Irina O Vvedenskaya; William Km Lai; Shrabani Basu; B Franklin Pugh; Bryce E Nickels; Craig D Kaplan
Journal:  Elife       Date:  2021-10-15       Impact factor: 8.140

4.  Universal promoter scanning by Pol II during transcription initiation in Saccharomyces cerevisiae.

Authors:  Chenxi Qiu; Huiyan Jin; Irina Vvedenskaya; Jordi Abante Llenas; Tingting Zhao; Indranil Malik; Alex M Visbisky; Scott L Schwartz; Ping Cui; Pavel Čabart; Kang Hoo Han; William K M Lai; Richard P Metz; Charles D Johnson; Sing-Hoi Sze; B Franklin Pugh; Bryce E Nickels; Craig D Kaplan
Journal:  Genome Biol       Date:  2020-06-02       Impact factor: 13.583
  4 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.