Literature DB >> 26545074

Human Gene Promoters Are Intrinsically Bidirectional.

Robin Andersson1, Yun Chen1, Leighton Core2, John T Lis3, Albin Sandelin4, Torben Heick Jensen5.   

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Year:  2015        PMID： 26545074      PMCID： PMC5485825          DOI： 10.1016/j.molcel.2015.10.015

Source DB:  PubMed          Journal:  Mol Cell        ISSN： 1097-2765            Impact factor:   17.970


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  12 in total

1.  Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters.

Authors:  Leighton J Core; Joshua J Waterfall; John T Lis
Journal:  Science       Date:  2008-12-04       Impact factor: 47.728

2.  Polyadenylation site-induced decay of upstream transcripts enforces promoter directionality.

Authors:  Evgenia Ntini; Aino I Järvelin; Jette Bornholdt; Yun Chen; Mette Boyd; Mette Jørgensen; Robin Andersson; Ilka Hoof; Aleks Schein; Peter R Andersen; Pia K Andersen; Pascal Preker; Eivind Valen; Xiaobei Zhao; Vicent Pelechano; Lars M Steinmetz; Albin Sandelin; Torben Heick Jensen
Journal:  Nat Struct Mol Biol       Date:  2013-07-14       Impact factor: 15.369

3.  Antisense RNA polymerase II divergent transcripts are P-TEFb dependent and substrates for the RNA exosome.

Authors:  Ryan A Flynn; Albert E Almada; Jesse R Zamudio; Phillip A Sharp
Journal:  Proc Natl Acad Sci U S A       Date:  2011-06-13       Impact factor: 11.205

4.  Human promoters are intrinsically directional.

Authors:  Sascha H C Duttke; Scott A Lacadie; Mahmoud M Ibrahim; Christopher K Glass; David L Corcoran; Christopher Benner; Sven Heinz; James T Kadonaga; Uwe Ohler
Journal:  Mol Cell       Date:  2015-01-29       Impact factor: 17.970

Review 5.  Perspectives on the RNA polymerase II core promoter.

Authors:  James T Kadonaga
Journal:  Wiley Interdiscip Rev Dev Biol       Date:  2011-12-06       Impact factor: 5.814

6.  Analysis of nascent RNA identifies a unified architecture of initiation regions at mammalian promoters and enhancers.

Authors:  Leighton J Core; André L Martins; Charles G Danko; Colin T Waters; Adam Siepel; John T Lis
Journal:  Nat Genet       Date:  2014-11-10       Impact factor: 38.330

7.  Nuclear stability and transcriptional directionality separate functionally distinct RNA species.

Authors:  Robin Andersson; Peter Refsing Andersen; Eivind Valen; Leighton J Core; Jette Bornholdt; Mette Boyd; Torben Heick Jensen; Albin Sandelin
Journal:  Nat Commun       Date:  2014-11-12       Impact factor: 14.919

8.  Divergent transcription from active promoters.

Authors:  Amy C Seila; J Mauro Calabrese; Stuart S Levine; Gene W Yeo; Peter B Rahl; Ryan A Flynn; Richard A Young; Phillip A Sharp
Journal:  Science       Date:  2008-12-04       Impact factor: 47.728

9.  Genome-wide structure and organization of eukaryotic pre-initiation complexes.

Authors:  Ho Sung Rhee; B Franklin Pugh
Journal:  Nature       Date:  2012-01-18       Impact factor: 49.962

10.  Promoter directionality is controlled by U1 snRNP and polyadenylation signals.

Authors:  Albert E Almada; Xuebing Wu; Andrea J Kriz; Christopher B Burge; Phillip A Sharp
Journal:  Nature       Date:  2013-06-23       Impact factor: 49.962
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  34 in total

1.  Perspectives on Unidirectional versus Divergent Transcription.

Authors:  Sascha H C Duttke; Scott A Lacadie; Mahmoud M Ibrahim; Christopher K Glass; David L Corcoran; Christopher Benner; Sven Heinz; James T Kadonaga; Uwe Ohler
Journal:  Mol Cell       Date:  2015-11-05       Impact factor: 17.970

2.  The RNA exosome shapes the expression of key protein-coding genes.

Authors:  Mengjun Wu; Evdoxia Karadoulama; Marta Lloret-Llinares; Jerome Olivier Rouviere; Christian Skov Vaagensø; Martin Moravec; Bingnan Li; Jingwen Wang; Guifen Wu; Maria Gockert; Vicent Pelechano; Torben Heick Jensen; Albin Sandelin
Journal:  Nucleic Acids Res       Date:  2020-09-04       Impact factor: 16.971

Review 3.  Eukaryotic core promoters and the functional basis of transcription initiation.

Authors:  Vanja Haberle; Alexander Stark
Journal:  Nat Rev Mol Cell Biol       Date:  2018-10       Impact factor: 94.444

4.  Pairs of promoter pairs in a web of transcription.

Authors:  Craig D Kaplan
Journal:  Nat Genet       Date:  2016-08-30       Impact factor: 38.330

Review 5.  Emerging roles of transcriptional enhancers in chromatin looping and promoter-proximal pausing of RNA polymerase II.

Authors:  Huan Meng; Blaine Bartholomew
Journal:  J Biol Chem       Date:  2017-11-29       Impact factor: 5.157

Review 6.  RNA Polymerase Collision versus DNA Structural Distortion: Twists and Turns Can Cause Break Failure.

Authors:  Nicholas R Pannunzio; Michael R Lieber
Journal:  Mol Cell       Date:  2016-05-05       Impact factor: 17.970

7.  Developmental Control of NRAMP1 (SLC11A1) Expression in Professional Phagocytes.

Authors:  Mathieu F M Cellier
Journal:  Biology (Basel)       Date:  2017-05-03

8.  Discriminative identification of transcriptional responses of promoters and enhancers after stimulus.

Authors:  Dimitrios Kleftogiannis; Panos Kalnis; Erik Arner; Vladimir B Bajic
Journal:  Nucleic Acids Res       Date:  2017-02-28       Impact factor: 16.971

Review 9.  Molecular mechanisms driving transcriptional stress responses.

Authors:  Anniina Vihervaara; Fabiana M Duarte; John T Lis
Journal:  Nat Rev Genet       Date:  2018-06       Impact factor: 53.242

Review 10.  The Determinants of Directionality in Transcriptional Initiation.

Authors:  Dia N Bagchi; Vishwanath R Iyer
Journal:  Trends Genet       Date:  2016-04-07       Impact factor: 11.639
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