Literature DB >> 27573113

Protein folding in the cell envelope of Escherichia coli.

Jozefien De Geyter1, Alexandra Tsirigotaki1, Georgia Orfanoudaki2, Valentina Zorzini1, Anastassios Economou1,2, Spyridoula Karamanou1.   

Abstract

While the entire proteome is synthesized on cytoplasmic ribosomes, almost half associates with, localizes in or crosses the bacterial cell envelope. In Escherichia coli a variety of mechanisms are important for taking these polypeptides into or across the plasma membrane, maintaining them in soluble form, trafficking them to their correct cell envelope locations and then folding them into the right structures. The fidelity of these processes must be maintained under various environmental conditions including during stress; if this fails, proteases are called in to degrade mislocalized or aggregated proteins. Various soluble, diffusible chaperones (acting as holdases, foldases or pilotins) and folding catalysts are also utilized to restore proteostasis. These responses can be general, dealing with multiple polypeptides, with functional overlaps and operating within redundant networks. Other chaperones are specialized factors, dealing only with a few exported proteins. Several complex machineries have evolved to deal with binding to, integration in and crossing of the outer membrane. This complex protein network is responsible for fundamental cellular processes such as cell wall biogenesis; cell division; the export, uptake and degradation of molecules; and resistance against exogenous toxic factors. The underlying processes, contributing to our fundamental understanding of proteostasis, are a treasure trove for the development of novel antibiotics, biopharmaceuticals and vaccines.

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Year:  2016        PMID: 27573113     DOI: 10.1038/nmicrobiol.2016.107

Source DB:  PubMed          Journal:  Nat Microbiol        ISSN: 2058-5276            Impact factor:   17.745


  171 in total

1.  Characterization of the Escherichia coli sigma E regulon.

Authors:  C Dartigalongue; D Missiakas; S Raina
Journal:  J Biol Chem       Date:  2001-03-23       Impact factor: 5.157

2.  Crystal structure of Skp, a prefoldin-like chaperone that protects soluble and membrane proteins from aggregation.

Authors:  Troy A Walton; Marcelo C Sousa
Journal:  Mol Cell       Date:  2004-08-13       Impact factor: 17.970

3.  Assembly of the secretion pores GspD, Wza and CsgG into bacterial outer membranes does not require the Omp85 proteins BamA or TamA.

Authors:  Rhys A Dunstan; Iain D Hay; Jonathan J Wilksch; Ralf B Schittenhelm; Anthony W Purcell; Joan Clark; Adam Costin; Georg Ramm; Richard A Strugnell; Trevor Lithgow
Journal:  Mol Microbiol       Date:  2015-06-06       Impact factor: 3.501

4.  Identification of putative substrates for the periplasmic chaperone YfgM in Escherichia coli using quantitative proteomics.

Authors:  Hansjörg Götzke; Claudio Muheim; A F Maarten Altelaar; Albert J R Heck; Gianluca Maddalo; Daniel O Daley
Journal:  Mol Cell Proteomics       Date:  2014-11-17       Impact factor: 5.911

5.  The structure of glutamine-binding protein complexed with glutamine at 1.94 A resolution: comparisons with other amino acid binding proteins.

Authors:  Y J Sun; J Rose; B C Wang; C D Hsiao
Journal:  J Mol Biol       Date:  1998-04-24       Impact factor: 5.469

Review 6.  Outer-membrane vesicles from Gram-negative bacteria: biogenesis and functions.

Authors:  Carmen Schwechheimer; Meta J Kuehn
Journal:  Nat Rev Microbiol       Date:  2015-10       Impact factor: 60.633

Review 7.  Curli biogenesis and function.

Authors:  Michelle M Barnhart; Matthew R Chapman
Journal:  Annu Rev Microbiol       Date:  2006       Impact factor: 15.500

8.  Proteome-wide subcellular topologies of E. coli polypeptides database (STEPdb).

Authors:  Georgia Orfanoudaki; Anastassios Economou
Journal:  Mol Cell Proteomics       Date:  2014-09-10       Impact factor: 5.911

9.  Pathways of colicin import: utilization of BtuB, OmpF porin and the TolC drug-export protein.

Authors:  Stanislav D Zakharov; Onkar Sharma; Mariya Zhalnina; Eiki Yamashita; William A Cramer
Journal:  Biochem Soc Trans       Date:  2012-12-01       Impact factor: 5.407

10.  Newly folded substrates inside the molecular cage of the HtrA chaperone DegQ.

Authors:  Hélène Malet; Flavia Canellas; Justyna Sawa; Jun Yan; Konstantinos Thalassinos; Michael Ehrmann; Tim Clausen; Helen R Saibil
Journal:  Nat Struct Mol Biol       Date:  2012-01-15       Impact factor: 15.369

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  23 in total

Review 1.  The β-barrel assembly machinery in motion.

Authors:  Nicholas Noinaj; James C Gumbart; Susan K Buchanan
Journal:  Nat Rev Microbiol       Date:  2017-02-20       Impact factor: 60.633

Review 2.  Protein Transport Across the Bacterial Plasma Membrane by the Sec Pathway.

Authors:  Dries Smets; Maria S Loos; Spyridoula Karamanou; Anastassios Economou
Journal:  Protein J       Date:  2019-06       Impact factor: 2.371

Review 3.  Protein export through the bacterial Sec pathway.

Authors:  Alexandra Tsirigotaki; Jozefien De Geyter; Nikolina Šoštaric; Anastassios Economou; Spyridoula Karamanou
Journal:  Nat Rev Microbiol       Date:  2016-11-28       Impact factor: 60.633

4.  Structural basis for substrate selection by the translocation and assembly module of the β-barrel assembly machinery.

Authors:  Rebecca S Bamert; Karl Lundquist; Hyea Hwang; Chaille T Webb; Takoya Shiota; Christopher J Stubenrauch; Mathew J Belousoff; Robert J A Goode; Ralf B Schittenhelm; Richard Zimmerman; Martin Jung; James C Gumbart; Trevor Lithgow
Journal:  Mol Microbiol       Date:  2017-08-09       Impact factor: 3.501

5.  Trigger factor is a bona fide secretory pathway chaperone that interacts with SecB and the translocase.

Authors:  Jozefien De Geyter; Athina G Portaliou; Bindu Srinivasu; Srinath Krishnamurthy; Anastassios Economou; Spyridoula Karamanou
Journal:  EMBO Rep       Date:  2020-04-19       Impact factor: 8.807

6.  Effective prediction of bacterial type IV secreted effectors by combined features of both C-termini and N-termini.

Authors:  Yu Wang; Yanzhi Guo; Xuemei Pu; Menglong Li
Journal:  J Comput Aided Mol Des       Date:  2017-11-10       Impact factor: 3.686

7.  Hierarchical protein targeting and secretion is controlled by an affinity switch in the type III secretion system of enteropathogenic Escherichia coli.

Authors:  Athina G Portaliou; Konstantinos C Tsolis; Maria S Loos; Vassileia Balabanidou; Josep Rayo; Alexandra Tsirigotaki; Valerie F Crepin; Gad Frankel; Charalampos G Kalodimos; Spyridoula Karamanou; Anastassios Economou
Journal:  EMBO J       Date:  2017-11-06       Impact factor: 11.598

8.  Identification of specific posttranslational O-mycoloylations mediating protein targeting to the mycomembrane.

Authors:  Clément Carel; Julien Marcoux; Valérie Réat; Julien Parra; Guillaume Latgé; Françoise Laval; Pascal Demange; Odile Burlet-Schiltz; Alain Milon; Mamadou Daffé; Maryelle G Tropis; Marie A M Renault
Journal:  Proc Natl Acad Sci U S A       Date:  2017-04-03       Impact factor: 11.205

Review 9.  How the assembly and protection of the bacterial cell envelope depend on cysteine residues.

Authors:  Jean-François Collet; Seung-Hyun Cho; Bogdan I Iorga; Camille V Goemans
Journal:  J Biol Chem       Date:  2020-06-02       Impact factor: 5.157

10.  Direct and Indirect Interactions Promote Complexes of the Lipoprotein LbcA, the CtpA Protease and Its Substrates, and Other Cell Wall Proteins in Pseudomonas aeruginosa.

Authors:  Dolonchapa Chakraborty; Andrew J Darwin
Journal:  J Bacteriol       Date:  2021-09-27       Impact factor: 3.490

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