Literature DB >> 27565203

Targeted proteomic assays for the verification of global proteomics insights.

Stefani N Thomas1, Hui Zhang1.   

Abstract

Entities:  

Keywords:  SRM; SWATH; biomarker; mass spectrometry; proteomics

Year:  2016        PMID： 27565203      PMCID： PMC5332399          DOI： 10.1080/14789450.2016.1229601

Source DB:  PubMed          Journal:  Expert Rev Proteomics        ISSN： 1478-9450            Impact factor:   3.940


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  21 in total

1.  Mass spectrometric quantitation of peptides and proteins using Stable Isotope Standards and Capture by Anti-Peptide Antibodies (SISCAPA).

Authors:  N Leigh Anderson; Norman G Anderson; Lee R Haines; Darryl B Hardie; Robert W Olafson; Terry W Pearson
Journal:  J Proteome Res       Date:  2004 Mar-Apr       Impact factor: 4.466

2.  Targeted data extraction of the MS/MS spectra generated by data-independent acquisition: a new concept for consistent and accurate proteome analysis.

Authors:  Ludovic C Gillet; Pedro Navarro; Stephen Tate; Hannes Röst; Nathalie Selevsek; Lukas Reiter; Ron Bonner; Ruedi Aebersold
Journal:  Mol Cell Proteomics       Date:  2012-01-18       Impact factor: 5.911

3.  Parallel reaction monitoring for high resolution and high mass accuracy quantitative, targeted proteomics.

Authors:  Amelia C Peterson; Jason D Russell; Derek J Bailey; Michael S Westphall; Joshua J Coon
Journal:  Mol Cell Proteomics       Date:  2012-08-03       Impact factor: 5.911

4.  OpenSWATH enables automated, targeted analysis of data-independent acquisition MS data.

Authors:  Hannes L Röst; George Rosenberger; Pedro Navarro; Ludovic Gillet; Saša M Miladinović; Olga T Schubert; Witold Wolski; Ben C Collins; Johan Malmström; Lars Malmström; Ruedi Aebersold
Journal:  Nat Biotechnol       Date:  2014-03       Impact factor: 54.908

5.  Multiple reaction monitoring to identify site-specific troponin I phosphorylated residues in the failing human heart.

Authors:  Pingbo Zhang; Jonathan A Kirk; Weihua Ji; Cristobal G dos Remedios; David A Kass; Jennifer E Van Eyk; Anne M Murphy
Journal:  Circulation       Date:  2012-09-12       Impact factor: 29.690

6.  Solid phase extraction of N-linked glycopeptides using hydrazide tip.

Authors:  Jing Chen; Punit Shah; Hui Zhang
Journal:  Anal Chem       Date:  2013-10-30       Impact factor: 6.986

7.  Interlaboratory reproducibility of selective reaction monitoring assays using multiple upfront analyte enrichment strategies.

Authors:  Amol Prakash; Taha Rezai; Bryan Krastins; David Sarracino; Michael Athanas; Paul Russo; Hui Zhang; Yuan Tian; Yan Li; Vathany Kulasingam; Andrei Drabovich; Christopher R Smith; Ihor Batruch; Paul E Oran; Claudia Fredolini; Alessandra Luchini; Lance Liotta; Emanuel Petricoin; Eleftherios P Diamandis; Daniel W Chan; Randall Nelson; Mary F Lopez
Journal:  J Proteome Res       Date:  2012-07-03       Impact factor: 4.466

8.  Demonstrating the feasibility of large-scale development of standardized assays to quantify human proteins.

Authors:  Jacob J Kennedy; Susan E Abbatiello; Kyunggon Kim; Ping Yan; Jeffrey R Whiteaker; Chenwei Lin; Jun Seok Kim; Yuzheng Zhang; Xianlong Wang; Richard G Ivey; Lei Zhao; Hophil Min; Youngju Lee; Myeong-Hee Yu; Eun Gyeong Yang; Cheolju Lee; Pei Wang; Henry Rodriguez; Youngsoo Kim; Steven A Carr; Amanda G Paulovich
Journal:  Nat Methods       Date:  2013-12-08       Impact factor: 28.547

9.  A list of candidate cancer biomarkers for targeted proteomics.

Authors:  Malu Polanski; N Leigh Anderson
Journal:  Biomark Insights       Date:  2007-02-07

10.  Glycoproteomic analysis of prostate cancer tissues by SWATH mass spectrometry discovers N-acylethanolamine acid amidase and protein tyrosine kinase 7 as signatures for tumor aggressiveness.

Authors:  Yansheng Liu; Jing Chen; Atul Sethi; Qing K Li; Lijun Chen; Ben Collins; Ludovic C J Gillet; Bernd Wollscheid; Hui Zhang; Ruedi Aebersold
Journal:  Mol Cell Proteomics       Date:  2014-04-16       Impact factor: 5.911
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  4 in total

Review 1.  Applications of Proteomics in Ovarian Cancer: Dawn of a New Era.

Authors:  Aruni Ghose; Sri Vidya Niharika Gullapalli; Naila Chohan; Anita Bolina; Michele Moschetta; Elie Rassy; Stergios Boussios
Journal:  Proteomes       Date:  2022-05-09

2.  Tear Proteins Calcium binding protein A4 (S100A4) and Prolactin Induced Protein (PIP) are Potential Biomarkers for Thyroid Eye Disease.

Authors:  Chiaw-Ling Chng; Lay Leng Seah; Morgan Yang; Sunny Yu Shen; Siew Kwan Koh; Yan Gao; Lu Deng; Louis Tong; Roger Wilmer Beuerman; Lei Zhou
Journal:  Sci Rep       Date:  2018-11-16       Impact factor: 4.379

3.  Evaluation of pathogen specific urinary peptides in tick-borne illnesses.

Authors:  Ruben Magni; Raghad Almofee; Sameen Yusuf; Claudius Mueller; Ngoc Vuong; Mahmood Almosuli; Minh Thu Hoang; Katherine Meade; Ish Sethi; Nuha Mohammed; Robyn Araujo; Teresa Kaza McDonald; Paul Marcelli; Virginia Espina; Brianna Kim; Anja Garritsen; Christine Green; Paul Russo; Weidong Zhou; Iosif Vaisman; Emanuel F Petricoin; Deborah Hoadley; Robert E Molestina; Hope McIntyre; Lance A Liotta; Alessandra Luchini
Journal:  Sci Rep       Date:  2020-11-09       Impact factor: 4.379

Review 4.  Quantitative Mass Spectrometry-Based Proteomics for Biomarker Development in Ovarian Cancer.

Authors:  Joohyun Ryu; Stefani N Thomas
Journal:  Molecules       Date:  2021-05-03       Impact factor: 4.411
  4 in total

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