| Literature DB >> 27555956 |
Laura N F Cardoso1, Thais C M Nogueira1, James L Wardell2, Solange M S V Wardell3, Marcus V N de Souza1, Mukesh M Jotani4, Edward R T Tiekink5.
Abstract
In the title carbohydrazide, C10Entities:
Keywords: Hirshfeld surface analysis; carbohydrazide; conformation; crystal structure; hydrogen bonding
Year: 2016 PMID: 27555956 PMCID: PMC4992931 DOI: 10.1107/S2056989016009968
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1The molecular structure of (I), showing displacement ellipsoids at the 70% probability level.
Figure 2The molecular packing in (I), showing (a) a view of a supramolecular chain aligned along the c axis sustained by amide-N—H⋯O(carbonyl) hydrogen bonds and (b) a view in projection down the c axis of the unit-cell contents; one chain has been highlighted in space-filling mode. The N—H⋯O, C—H⋯O and π–π interactions are shown as orange, blue and purple dashed lines, respectively. Colour code: S yellow, O red, N blue, C grey and H green.
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N1—H1 | 0.87 (3) | 2.05 (3) | 2.882 (4) | 159 (3) |
| C4—H4⋯O4ii | 0.95 | 2.42 | 3.293 (6) | 152 |
| C8—H8⋯O4iii | 0.95 | 2.53 | 3.242 (5) | 132 |
Symmetry codes: (i) ; (ii) ; (iii) .
Figure 3Two views of the Hirshfeld surface mapped over d norm for (I), with labels 1, 2, 3 and 4 indicating specific intermolecular interactions discussed in the text.
Figure 4A view of the Hirshfeld surface mapped over electrostatic potential for (I). The red and blue regions represent negative and positive electrostatic potentials, respectively.
Figure 5A view of Hirshfeld surface mapped over d norm for showing intermolecular interactions about a reference molecule of (I).
Summary of short interatomic contacts (Å) in the crystal of the title compound
| Contact | Distance | Symmetry operation |
|---|---|---|
| C2⋯C10 | 3.361 (5) |
|
| C5⋯H2 | 2.89 |
|
| N2⋯H6 | 2.72 |
|
| N2⋯H1 | 2.69 (4) |
|
| O1⋯H2 | 2.68 |
|
| O1⋯H6 | 2.68 |
|
Figure 6The two-dimensional fingerprint plots for (I), showing (a) all interactions, and delineated into (b) O⋯H/H⋯O, (c) H⋯H, (d) N⋯H/H⋯N, (e) C⋯H/H⋯C, (f) C⋯C, (g) C⋯O/H⋯O and (h) S⋯H/H⋯S interactions.
Percentage contribution of the different intermolecular interactions to the Hirshfeld surface of the title compound
| Contact | % |
|---|---|
| H⋯H | 13.8 |
| O⋯H/H⋯O | 36.4 |
| C⋯H/H⋯C | 7.4 |
| N⋯H/H⋯N | 7.5 |
| C⋯C | 6.6 |
| C⋯O/O⋯C | 8.3 |
| S⋯H/H⋯S | 8.9 |
| N⋯O/O⋯N | 3.1 |
| S⋯O/O⋯S | 2.6 |
| C⋯N/N⋯C | 2.1 |
| O⋯O | 1.5 |
| N⋯S/S⋯N | 0.6 |
| S⋯S | 0.6 |
| C⋯S/S⋯C | 0.5 |
| N⋯N | 0.1 |
Figure 7Two views of Hirshfeld surface mapped with shape-index property for (I). The pairs of red and blue regions identified with arrows indicate π–π stacking interactions.
Figure 8A view of Hirshfeld surface mapped over curvedness for (I). The flat regions highlight the involvement of rings in π–π stacking interactions.
Enrichment ratios (ER) for the title compound
| Contact | ER |
|---|---|
| H⋯H | 0.72 |
| O⋯H/H⋯O | 1.55 |
| N⋯H/H⋯N | 1.26 |
| C⋯C | 2.66 |
| C⋯O/O⋯C | 0.99 |
| C⋯H/H⋯C | 0.53 |
| S⋯O/O⋯S | 0.71 |
| N⋯O/O⋯N | 0.86 |
| S⋯H/H⋯S | 0.64 |
Figure 9Overlay diagram of molecules of (I) (red image) and (II) (blue). The molecules have been overlapped so that the five-membered rings are coincident.
Figure 10Preparation of the title compound. Reagents: i = SO2Cl2, MeOH; ii = N2H2·H2O, EtOH; iii = 5-nitrofurancarbaldehyde, EtOH.
Experimental details
| Crystal data | |
| Chemical formula | C10H7N3O4S |
|
| 265.25 |
| Crystal system, space group | Tetragonal, |
| Temperature (K) | 100 |
|
| 17.4072 (16), 14.4881 (10) |
|
| 4390.0 (9) |
|
| 16 |
| Radiation type | Mo |
| μ (mm−1) | 0.31 |
| Crystal size (mm) | 0.13 × 0.03 × 0.02 |
| Data collection | |
| Diffractometer | Rigaku Saturn724+ (2x2 bin mode) |
| Absorption correction | Multi-scan ( |
|
| 0.543, 1.000 |
| No. of measured, independent and observed [ | 10325, 2292, 2081 |
|
| 0.061 |
| (sin θ/λ)max (Å−1) | 0.649 |
| Refinement | |
|
| 0.045, 0.113, 1.05 |
| No. of reflections | 2292 |
| No. of parameters | 166 |
| No. of restraints | 2 |
| Δρmax, Δρmin (e Å−3) | 0.46, −0.31 |
| Absolute structure | Flack |
| Absolute structure parameter | −0.06 (6) |
Computer programs: CrystalClear-SM Expert (Rigaku, 2011 ▸), SHELXS97 (Sheldrick, 2008 ▸), SHELXL2014 (Sheldrick, 2015 ▸), ORTEP-3 for Windows (Farrugia, 2012 ▸), QMol (Gans & Shalloway, 2001 ▸), DIAMOND (Brandenburg, 2006 ▸) and publCIF (Westrip, 2010 ▸).
| C10H7N3O4S | |
| Mo | |
| Tetragonal, | Cell parameters from 9311 reflections |
| θ = 3.3–27.5° | |
| µ = 0.31 mm−1 | |
| Rod, yellow | |
| 0.13 × 0.03 × 0.02 mm |
| Rigaku Saturn724+ (2x2 bin mode) diffractometer | 2292 independent reflections |
| Radiation source: Rotating Anode | 2081 reflections with |
| Confocal monochromator | |
| Detector resolution: 28.5714 pixels mm-1 | θmax = 27.5°, θmin = 3.3° |
| profile data from ω–scans | |
| Absorption correction: multi-scan ( | |
| 10325 measured reflections |
| Refinement on | Hydrogen site location: mixed |
| Least-squares matrix: full | H-atom parameters not defined? |
| (Δ/σ)max < 0.001 | |
| Δρmax = 0.46 e Å−3 | |
| 2292 reflections | Δρmin = −0.31 e Å−3 |
| 166 parameters | Absolute structure: Flack |
| 2 restraints | Absolute structure parameter: −0.06 (6) |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| S1 | 0.48085 (6) | 0.10242 (6) | 0.44233 (8) | 0.0259 (3) | |
| O1 | 0.36361 (17) | 0.16769 (16) | 0.56218 (18) | 0.0200 (6) | |
| O2 | 0.22698 (16) | 0.39128 (15) | 0.66600 (18) | 0.0161 (6) | |
| O3 | 0.25495 (19) | 0.40880 (19) | 0.8415 (2) | 0.0265 (7) | |
| O4 | 0.18400 (18) | 0.51202 (19) | 0.8477 (2) | 0.0266 (7) | |
| N1 | 0.31555 (19) | 0.25578 (19) | 0.4618 (2) | 0.0165 (7) | |
| H1N | 0.319 (3) | 0.278 (2) | 0.4082 (17) | 0.020* | |
| N2 | 0.28004 (19) | 0.29467 (19) | 0.5325 (2) | 0.0171 (7) | |
| N3 | 0.2125 (2) | 0.4568 (2) | 0.8067 (2) | 0.0196 (7) | |
| C1 | 0.4111 (2) | 0.1666 (2) | 0.4094 (3) | 0.0162 (8) | |
| C2 | 0.4137 (2) | 0.1857 (2) | 0.3137 (3) | 0.0206 (9) | |
| H2 | 0.3797 | 0.2195 | 0.2824 | 0.025* | |
| C3 | 0.4770 (2) | 0.1443 (2) | 0.2728 (3) | 0.0221 (9) | |
| H3 | 0.4901 | 0.1482 | 0.2093 | 0.027* | |
| C4 | 0.5164 (3) | 0.0990 (2) | 0.3336 (3) | 0.0251 (10) | |
| H4 | 0.5595 | 0.0686 | 0.3166 | 0.030* | |
| C5 | 0.3616 (2) | 0.1960 (2) | 0.4838 (3) | 0.0158 (8) | |
| C6 | 0.2361 (2) | 0.3499 (2) | 0.5074 (3) | 0.0170 (8) | |
| H6 | 0.2247 | 0.3576 | 0.4439 | 0.020* | |
| C7 | 0.2040 (2) | 0.4004 (2) | 0.5764 (3) | 0.0166 (8) | |
| C8 | 0.1580 (2) | 0.4633 (2) | 0.5673 (3) | 0.0183 (8) | |
| H8 | 0.1351 | 0.4815 | 0.5120 | 0.022* | |
| C9 | 0.1511 (2) | 0.4962 (2) | 0.6561 (3) | 0.0181 (8) | |
| H9 | 0.1228 | 0.5406 | 0.6731 | 0.022* | |
| C10 | 0.1940 (2) | 0.4502 (2) | 0.7116 (3) | 0.0160 (8) |
| S1 | 0.0246 (6) | 0.0270 (6) | 0.0260 (5) | 0.0060 (4) | 0.0037 (5) | 0.0022 (4) |
| O1 | 0.0246 (16) | 0.0207 (15) | 0.0146 (14) | 0.0052 (11) | 0.0020 (11) | 0.0039 (11) |
| O2 | 0.0182 (14) | 0.0169 (14) | 0.0132 (13) | 0.0042 (10) | −0.0002 (11) | −0.0039 (11) |
| O3 | 0.0289 (17) | 0.0334 (18) | 0.0174 (15) | 0.0083 (13) | −0.0045 (13) | −0.0010 (13) |
| O4 | 0.0333 (18) | 0.0288 (18) | 0.0179 (15) | 0.0057 (14) | 0.0017 (13) | −0.0096 (13) |
| N1 | 0.0219 (17) | 0.0185 (17) | 0.0093 (15) | 0.0042 (13) | 0.0034 (13) | 0.0006 (13) |
| N2 | 0.0183 (17) | 0.0187 (16) | 0.0142 (16) | −0.0004 (13) | −0.0009 (13) | −0.0027 (13) |
| N3 | 0.0209 (17) | 0.0195 (18) | 0.0183 (17) | 0.0003 (13) | 0.0021 (14) | −0.0034 (13) |
| C1 | 0.0161 (18) | 0.0135 (18) | 0.0191 (19) | −0.0022 (14) | 0.0016 (15) | −0.0006 (14) |
| C2 | 0.020 (2) | 0.0125 (19) | 0.029 (2) | −0.0047 (14) | 0.0117 (17) | −0.0102 (16) |
| C3 | 0.028 (2) | 0.019 (2) | 0.020 (2) | 0.0015 (16) | 0.0085 (17) | −0.0002 (16) |
| C4 | 0.021 (2) | 0.027 (2) | 0.027 (2) | 0.0054 (17) | 0.0089 (18) | −0.0021 (18) |
| C5 | 0.0177 (19) | 0.0146 (18) | 0.0151 (18) | −0.0033 (14) | −0.0004 (15) | −0.0007 (14) |
| C6 | 0.0170 (19) | 0.019 (2) | 0.0150 (18) | 0.0014 (14) | 0.0004 (14) | −0.0017 (15) |
| C7 | 0.0176 (19) | 0.023 (2) | 0.0096 (18) | −0.0021 (15) | −0.0001 (14) | 0.0016 (15) |
| C8 | 0.018 (2) | 0.022 (2) | 0.0153 (19) | 0.0012 (14) | 0.0007 (15) | 0.0013 (16) |
| C9 | 0.020 (2) | 0.0170 (19) | 0.0176 (19) | 0.0015 (15) | 0.0042 (15) | 0.0017 (15) |
| C10 | 0.0156 (19) | 0.0174 (18) | 0.0150 (18) | −0.0003 (14) | 0.0021 (14) | −0.0013 (14) |
| S1—C4 | 1.694 (5) | C1—C5 | 1.472 (5) |
| S1—C1 | 1.718 (4) | C2—C3 | 1.444 (6) |
| O1—C5 | 1.239 (5) | C2—H2 | 0.9500 |
| O2—C10 | 1.349 (5) | C3—C4 | 1.367 (6) |
| O2—C7 | 1.367 (5) | C3—H3 | 0.9500 |
| O3—N3 | 1.225 (5) | C4—H4 | 0.9500 |
| O4—N3 | 1.234 (4) | C6—C7 | 1.443 (5) |
| N1—C5 | 1.351 (5) | C6—H6 | 0.9500 |
| N1—N2 | 1.374 (5) | C7—C8 | 1.364 (6) |
| N1—H1N | 0.870 (14) | C8—C9 | 1.413 (6) |
| N2—C6 | 1.281 (5) | C8—H8 | 0.9500 |
| N3—C10 | 1.419 (5) | C9—C10 | 1.358 (6) |
| C1—C2 | 1.427 (6) | C9—H9 | 0.9500 |
| C4—S1—C1 | 91.3 (2) | S1—C4—H4 | 123.4 |
| C10—O2—C7 | 104.6 (3) | O1—C5—N1 | 122.6 (4) |
| C5—N1—N2 | 118.1 (3) | O1—C5—C1 | 121.1 (4) |
| C5—N1—H1N | 120 (3) | N1—C5—C1 | 116.3 (3) |
| N2—N1—H1N | 119 (3) | N2—C6—C7 | 119.4 (3) |
| C6—N2—N1 | 115.3 (3) | N2—C6—H6 | 120.3 |
| O3—N3—O4 | 125.1 (4) | C7—C6—H6 | 120.3 |
| O3—N3—C10 | 118.9 (3) | O2—C7—C8 | 110.9 (3) |
| O4—N3—C10 | 116.0 (3) | O2—C7—C6 | 118.3 (3) |
| C2—C1—C5 | 130.5 (4) | C8—C7—C6 | 130.5 (4) |
| C2—C1—S1 | 113.5 (3) | C7—C8—C9 | 106.7 (4) |
| C5—C1—S1 | 115.9 (3) | C7—C8—H8 | 126.7 |
| C1—C2—C3 | 107.8 (4) | C9—C8—H8 | 126.7 |
| C1—C2—H2 | 126.1 | C10—C9—C8 | 104.7 (4) |
| C3—C2—H2 | 126.1 | C10—C9—H9 | 127.6 |
| C4—C3—C2 | 114.0 (4) | C8—C9—H9 | 127.6 |
| C4—C3—H3 | 123.0 | O2—C10—C9 | 113.1 (3) |
| C2—C3—H3 | 123.0 | O2—C10—N3 | 116.1 (3) |
| C3—C4—S1 | 113.3 (3) | C9—C10—N3 | 130.7 (4) |
| C3—C4—H4 | 123.4 | ||
| C5—N1—N2—C6 | −178.9 (3) | C10—O2—C7—C8 | −0.1 (4) |
| C4—S1—C1—C2 | 0.7 (3) | C10—O2—C7—C6 | 174.1 (3) |
| C4—S1—C1—C5 | −176.2 (3) | N2—C6—C7—O2 | 5.4 (6) |
| C5—C1—C2—C3 | 175.6 (4) | N2—C6—C7—C8 | 178.2 (4) |
| S1—C1—C2—C3 | −0.7 (4) | O2—C7—C8—C9 | −0.1 (4) |
| C1—C2—C3—C4 | 0.4 (5) | C6—C7—C8—C9 | −173.3 (4) |
| C2—C3—C4—S1 | 0.2 (5) | C7—C8—C9—C10 | 0.2 (4) |
| C1—S1—C4—C3 | −0.5 (3) | C7—O2—C10—C9 | 0.2 (4) |
| N2—N1—C5—O1 | 11.6 (5) | C7—O2—C10—N3 | −176.4 (3) |
| N2—N1—C5—C1 | −167.3 (3) | C8—C9—C10—O2 | −0.3 (4) |
| C2—C1—C5—O1 | 174.0 (4) | C8—C9—C10—N3 | 175.8 (4) |
| S1—C1—C5—O1 | −9.8 (5) | O3—N3—C10—O2 | −1.7 (5) |
| C2—C1—C5—N1 | −7.1 (6) | O4—N3—C10—O2 | 178.1 (3) |
| S1—C1—C5—N1 | 169.1 (3) | O3—N3—C10—C9 | −177.6 (4) |
| N1—N2—C6—C7 | −172.1 (3) | O4—N3—C10—C9 | 2.1 (6) |
| H··· | ||||
| N1—H1 | 0.87 (3) | 2.05 (3) | 2.882 (4) | 159 (3) |
| C4—H4···O4ii | 0.95 | 2.42 | 3.293 (6) | 152 |
| C8—H8···O4iii | 0.95 | 2.53 | 3.242 (5) | 132 |