Literature DB >> 27539869

R.I.P. to the PIP: PCNA-binding motif no longer considered specific: PIP motifs and other related sequences are not distinct entities and can bind multiple proteins involved in genome maintenance.

Elizabeth M Boehm, M Todd Washington1.   

Abstract

Many proteins responsible for genome maintenance interact with one another via short sequence motifs. The best known of these are PIP motifs, which mediate interactions with the replication protein PCNA. Others include RIR motifs, which bind the translesion synthesis protein Rev1, and MIP motifs, which bind the mismatch repair protein Mlh1. Although these motifs have similar consensus sequences, they have traditionally been viewed as separate motifs, each with their own target protein. In this article, we review several recent studies that challenge this view. Taken together, they imply that these different motifs are not distinct entities. Instead, there is a single, broader class of motifs, which we call "PIP-like" motifs, which have overlapping specificities and are capable of binding multiple target proteins. Given this, we must reassess the role of these motifs in forming the network of interacting proteins responsible for genome maintenance.
© 2016 WILEY Periodicals, Inc.

Entities:  

Keywords:  DNA recombination; DNA repair; DNA replication; Rev1; translesion synthesis

Mesh:

Substances:

Year:  2016        PMID: 27539869      PMCID: PMC5341575          DOI: 10.1002/bies.201600116

Source DB:  PubMed          Journal:  Bioessays        ISSN: 0265-9247            Impact factor:   4.345


  45 in total

1.  Differential correction of lagging-strand replication errors made by DNA polymerases {alpha} and {delta}.

Authors:  Stephanie A Nick McElhinny; Grace E Kissling; Thomas A Kunkel
Journal:  Proc Natl Acad Sci U S A       Date:  2010-11-01       Impact factor: 11.205

2.  Division of labor at the eukaryotic replication fork.

Authors:  Stephanie A Nick McElhinny; Dmitry A Gordenin; Carrie M Stith; Peter M J Burgers; Thomas A Kunkel
Journal:  Mol Cell       Date:  2008-04-25       Impact factor: 17.970

3.  The Proliferating Cell Nuclear Antigen (PCNA)-interacting Protein (PIP) Motif of DNA Polymerase η Mediates Its Interaction with the C-terminal Domain of Rev1.

Authors:  Elizabeth M Boehm; Kyle T Powers; Christine M Kondratick; Maria Spies; Jon C D Houtman; M Todd Washington
Journal:  J Biol Chem       Date:  2016-02-22       Impact factor: 5.157

4.  Structural basis of Rev1-mediated assembly of a quaternary vertebrate translesion polymerase complex consisting of Rev1, heterodimeric polymerase (Pol) ζ, and Pol κ.

Authors:  Jessica Wojtaszek; Chul-Jin Lee; Sanjay D'Souza; Brenda Minesinger; Hyungjin Kim; Alan D D'Andrea; Graham C Walker; Pei Zhou
Journal:  J Biol Chem       Date:  2012-08-02       Impact factor: 5.157

5.  Structure of the C-terminal region of p21(WAF1/CIP1) complexed with human PCNA.

Authors:  J M Gulbis; Z Kelman; J Hurwitz; M O'Donnell; J Kuriyan
Journal:  Cell       Date:  1996-10-18       Impact factor: 41.582

6.  Ntg2p, a Saccharomyces cerevisiae DNA N-glycosylase/apurinic or apyrimidinic lyase involved in base excision repair of oxidative DNA damage, interacts with the DNA mismatch repair protein Mlh1p. Identification of a Mlh1p binding motif.

Authors:  Lionel Gellon; Michel Werner; Serge Boiteux
Journal:  J Biol Chem       Date:  2002-05-31       Impact factor: 5.157

Review 7.  Separate roles of structured and unstructured regions of Y-family DNA polymerases.

Authors:  Haruo Ohmori; Tomo Hanafusa; Eiji Ohashi; Cyrus Vaziri
Journal:  Adv Protein Chem Struct Biol       Date:  2009-11-27       Impact factor: 3.507

8.  Complex formation of yeast Rev1 with DNA polymerase eta.

Authors:  Narottam Acharya; Lajos Haracska; Satya Prakash; Louise Prakash
Journal:  Mol Cell Biol       Date:  2007-09-17       Impact factor: 4.272

Review 9.  Proliferating cell nuclear antigen: a proteomics view.

Authors:  S N Naryzhny
Journal:  Cell Mol Life Sci       Date:  2008-11       Impact factor: 9.261

10.  Involvement of budding yeast Rad5 in translesion DNA synthesis through physical interaction with Rev1.

Authors:  Xin Xu; Aiyang Lin; Cuiyan Zhou; Susan R Blackwell; Yiran Zhang; Zihao Wang; Qianqian Feng; Ruifang Guan; Michelle D Hanna; Zhucheng Chen; Wei Xiao
Journal:  Nucleic Acids Res       Date:  2016-03-21       Impact factor: 16.971

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  31 in total

Review 1.  Translesion DNA polymerases in eukaryotes: what makes them tick?

Authors:  Alexandra Vaisman; Roger Woodgate
Journal:  Crit Rev Biochem Mol Biol       Date:  2017-03-09       Impact factor: 8.250

2.  The replicative helicase MCM recruits cohesin acetyltransferase ESCO2 to mediate centromeric sister chromatid cohesion.

Authors:  Miroslav P Ivanov; Rene Ladurner; Ina Poser; Rebecca Beveridge; Evelyn Rampler; Otto Hudecz; Maria Novatchkova; Jean-Karim Hériché; Gordana Wutz; Petra van der Lelij; Emanuel Kreidl; James Ra Hutchins; Heinz Axelsson-Ekker; Jan Ellenberg; Anthony A Hyman; Karl Mechtler; Jan-Michael Peters
Journal:  EMBO J       Date:  2018-06-21       Impact factor: 11.598

3.  Multivalent interaction of ESCO2 with the replication machinery is required for sister chromatid cohesion in vertebrates.

Authors:  Dawn Bender; Eulália Maria Lima Da Silva; Jingrong Chen; Annelise Poss; Lauren Gawey; Zane Rulon; Susannah Rankin
Journal:  Proc Natl Acad Sci U S A       Date:  2019-12-26       Impact factor: 11.205

Review 4.  The Rev1-Polζ translesion synthesis mutasome: Structure, interactions and inhibition.

Authors:  Alessandro A Rizzo; Dmitry M Korzhnev
Journal:  Enzymes       Date:  2019-08-09

5.  TRIM28 functions as the SUMO E3 ligase for PCNA in prevention of transcription induced DNA breaks.

Authors:  Min Li; Xiaohua Xu; Chou-Wei Chang; Yilun Liu
Journal:  Proc Natl Acad Sci U S A       Date:  2020-09-08       Impact factor: 11.205

6.  The p12 subunit of human polymerase δ uses an atypical PIP box for molecular recognition of proliferating cell nuclear antigen (PCNA).

Authors:  Amaia Gonzalez-Magaña; Alain Ibáñez de Opakua; Miguel Romano-Moreno; Javier Murciano-Calles; Nekane Merino; Irene Luque; Adriana L Rojas; Silvia Onesti; Francisco J Blanco; Alfredo De Biasio
Journal:  J Biol Chem       Date:  2019-01-17       Impact factor: 5.157

7.  HMCES Functions in the Alternative End-Joining Pathway of the DNA DSB Repair during Class Switch Recombination in B Cells.

Authors:  Vipul Shukla; Levon Halabelian; Sanjana Balagere; Daniela Samaniego-Castruita; Douglas E Feldman; Cheryl H Arrowsmith; Anjana Rao; L Aravind
Journal:  Mol Cell       Date:  2019-12-02       Impact factor: 17.970

Review 8.  Eukaryotic translesion synthesis: Choosing the right tool for the job.

Authors:  Kyle T Powers; M Todd Washington
Journal:  DNA Repair (Amst)       Date:  2018-08-24

9.  Binding of the regulatory domain of MutL to the sliding β-clamp is species specific.

Authors:  Ahmad W Almawi; Michelle K Scotland; Justin R Randall; Linda Liu; Heather K Martin; Lauralicia Sacre; Yao Shen; Monica C Pillon; Lyle A Simmons; Mark D Sutton; Alba Guarné
Journal:  Nucleic Acids Res       Date:  2019-05-21       Impact factor: 16.971

10.  The C-terminal region of translesion synthesis DNA polymerase η is partially unstructured and has high conformational flexibility.

Authors:  Kyle T Powers; Adrian H Elcock; M Todd Washington
Journal:  Nucleic Acids Res       Date:  2018-02-28       Impact factor: 16.971

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