| Literature DB >> 27537861 |
Niall J O'Sullivan1,2, Matthew D Teasdale3, Valeria Mattiangeli3, Frank Maixner1, Ron Pinhasi2, Daniel G Bradley3, Albert Zink1.
Abstract
The attire of the Tyrolean Iceman, a 5,300-year-old natural mummy from the Ötzal Italian Alps, provides a surviving example of ancient manufacturing technologies. Research into his garments has however, been limited by ambiguity surrounding their source species. Here we present a targeted enrichment and sequencing of full mitochondrial genomes sampled from his clothes and quiver, which elucidates the species of production for nine fragments. Results indicate that the majority of the samples originate from domestic ungulate species (cattle, sheep and goat), whose recovered haplogroups are now at high frequency in today's domestic populations. Intriguingly, the hat and quiver samples were produced from wild species, brown bear and roe deer respectively. Combined, these results suggest that Copper Age populations made considered choices of clothing material from both the wild and domestic populations available to them. Moreover, these results show the potential for the recovery of complete mitochondrial genomes from degraded prehistoric artefacts.Entities:
Mesh:
Year: 2016 PMID: 27537861 PMCID: PMC4989873 DOI: 10.1038/srep31279
Source DB: PubMed Journal: Sci Rep ISSN: 2045-2322 Impact factor: 4.379
Summary statistics and identification of sequenced libraries of this study.
| Sample | Species | Haplo- groups | Reads shotgun (#) | Mapped unique reads shotgun (#) | Reads capture (#) | Mapped unique reads capture (#) | Enrich-ment fold | Coverage (X) | Conta- mination (%) |
|---|---|---|---|---|---|---|---|---|---|
| Coat (10304) | Sheep | B1 | 824,279 | 14 | 1,739,134 | 7,028 | 238 | 20.6 | 0.43 |
| Dark coat (OCD) | Sheep | B1 | 723,348 | 6 | 2,422,032 | 5,141 | 256 | 15.5 | 1.32 |
| Light coat (OCL2) | Sheep | B1 | 533,933 | 5 | 594,102 | 1,197 | 215 | 3.6 | 3.97 |
| Loincloth (OLC) | Sheep | B1 | 587,776 | 32 | 1,287,892 | 14,879 | 212 | 48.3 | 1.58 |
| Coat (O314) | Goat | A | 870,940 | 2,763 | 1,993,094 | 29,521 | 5 | 104.6 | 0.38 |
| Leggings (OL) | Goat | A | 962,864 | 102 | 4,900,933 | 30,502 | 59 | 110 | 0.54 |
| Shoelace (OSA) | Cattle | T3 | 13,234,516 | 2,169 | 72,794 | 7,398 | 620 | 22.4 | 4.76 |
| Quiver (OCA) | Roe Deer | Central European | 4,947,201 | 194 | 364,953 | 822 | 57 | 2.0 | NA |
| Hat (OH) | Brown bear | Western Lineage | NA | NA | 21,672 | 151 | NA | 0.4 | NA |
*Indicates partially reconstructed mitogenomes.
aFastq screen species identification.
bThe haplogroups were identified for each domestic species using the MitoToolPy tool and the observation of previously defined haplotypes for domesticated species. Wild species clades were assigned based on how they clustered in their respective phylogenies (Fig. 2).
cEnrichment fold roughly estimates the success of targeted enrichment. It is based on a downsampling of shotgun and capture reads to a comparable number. The downsampled number of captured reads is divided by the number of shotgun reads. Two exceptions are for sample OCA and OSA in which the shotgun libraries were more abundant and hence were downsampled rather than the capture libraries.
Figure 1Phylogeny based on fully reconstructed mitogenomes.
Asterisks in labels of branches in trees (A) and (B) correspond to asterisks on respective clade/haplogroup labels where inter-species mono-phylogeny occurs. Outgroups used to root trees have been removed (Supplementary Table 1). Black circles on nodes indicate that there was more than 90% bootstrap support in neighbour joining, maximum parsimony and maximum likelihood topologies. Coloured boxes highlight associated haplogroups of samples. Animal illustrations provided by Matthew Collins (pers coms).
Figure 2Species phylogeny based on partially reconstructed mitogenomes.
Aligned sequences had all gap sites removed with Gblocks, except the sheep light coat (OCL2). Asterisks on branch labels of trees (A) and (C) correspond to clade/haplogroup names where inter-subspecies mono-phylogeny occur. Outgroups used to root trees have been removed (Supplementary Table 1). Black circles on nodes indicate that there was more than 90% bootstrap support in neighbour joining, maximum parsimony and maximum likelihood topologies. Coloured boxes highlight associated haplogroups of samples. Animal illustrations provided by Matthew Collins (pers coms).