Literature DB >> 29165247

T2N as a new tool for robust electrophysiological modeling demonstrated for mature and adult-born dentate granule cells.

Hermann Cuntz1,2, Peter Jedlicka3, Marcel Beining1,2,3,4, Lucas Alberto Mongiat5, Stephan Wolfgang Schwarzacher3.   

Abstract

Compartmental models are the theoretical tool of choice for understanding single neuron computations. However, many models are incomplete, built ad hoc and require tuning for each novel condition rendering them of limited usability. Here, we present T2N, a powerful interface to control NEURON with Matlab and TREES toolbox, which supports generating models stable over a broad range of reconstructed and synthetic morphologies. We illustrate this for a novel, highly detailed active model of dentate granule cells (GCs) replicating a wide palette of experiments from various labs. By implementing known differences in ion channel composition and morphology, our model reproduces data from mouse or rat, mature or adult-born GCs as well as pharmacological interventions and epileptic conditions. This work sets a new benchmark for detailed compartmental modeling. T2N is suitable for creating robust models useful for large-scale networks that could lead to novel predictions. We discuss possible T2N application in degeneracy studies.

Entities:  

Keywords:  adult neurogenesis; compartmental modeling; computational biology; dentate gyrus; electrophysiology; granule cell; morphological modeling; mouse; neuroscience; rat; systems biology

Mesh:

Year:  2017        PMID: 29165247      PMCID: PMC5737656          DOI: 10.7554/eLife.26517

Source DB:  PubMed          Journal:  Elife        ISSN: 2050-084X            Impact factor:   8.140


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