Literature DB >> 27535369

Rapid classification of hippocampal replay content for real-time applications.

Xinyi Deng1,2, Daniel F Liu3, Mattias P Karlsson4, Loren M Frank4,5,6, Uri T Eden7.   

Abstract

Sharp-wave ripple (SWR) events in the hippocampus replay millisecond-timescale patterns of place cell activity related to the past experience of an animal. Interrupting SWR events leads to learning and memory impairments, but how the specific patterns of place cell spiking seen during SWRs contribute to learning and memory remains unclear. A deeper understanding of this issue will require the ability to manipulate SWR events based on their content. Accurate real-time decoding of SWR replay events requires new algorithms that are able to estimate replay content and the associated uncertainty, along with software and hardware that can execute these algorithms for biological interventions on a millisecond timescale. Here we develop an efficient estimation algorithm to categorize the content of replay from multiunit spiking activity. Specifically, we apply real-time decoding methods to each SWR event and then compute the posterior probability of the replay feature. We illustrate this approach by classifying SWR events from data recorded in the hippocampus of a rat performing a spatial memory task into four categories: whether they represent outbound or inbound trajectories and whether the activity is replayed forward or backward in time. We show that our algorithm can classify the majority of SWR events in a recording epoch within 20 ms of the replay onset with high certainty, which makes the algorithm suitable for a real-time implementation with short latencies to incorporate into content-based feedback experiments.
Copyright © 2016 the American Physiological Society.

Entities:  

Keywords:  hippocampus; neural control; real-time decoding; replay; state-space models

Mesh:

Year:  2016        PMID: 27535369      PMCID: PMC5102323          DOI: 10.1152/jn.00151.2016

Source DB:  PubMed          Journal:  J Neurophysiol        ISSN: 0022-3077            Impact factor:   2.714


  44 in total

1.  Estimating a state-space model from point process observations.

Authors:  Anne C Smith; Emery N Brown
Journal:  Neural Comput       Date:  2003-05       Impact factor: 2.026

2.  A point process framework for relating neural spiking activity to spiking history, neural ensemble, and extrinsic covariate effects.

Authors:  Wilson Truccolo; Uri T Eden; Matthew R Fellows; John P Donoghue; Emery N Brown
Journal:  J Neurophysiol       Date:  2004-09-08       Impact factor: 2.714

3.  Decoding movement trajectories through a T-maze using point process filters applied to place field data from rat hippocampal region CA1.

Authors:  Yifei Huang; Mark P Brandon; Amy L Griffin; Michael E Hasselmo; Uri T Eden
Journal:  Neural Comput       Date:  2009-12       Impact factor: 2.026

4.  Oscillatory coupling of hippocampal pyramidal cells and interneurons in the behaving Rat.

Authors:  J Csicsvari; H Hirase; A Czurkó; A Mamiya; G Buzsáki
Journal:  J Neurosci       Date:  1999-01-01       Impact factor: 6.167

5.  The hippocampus as a spatial map. Preliminary evidence from unit activity in the freely-moving rat.

Authors:  J O'Keefe; J Dostrovsky
Journal:  Brain Res       Date:  1971-11       Impact factor: 3.252

6.  Dynamics of the hippocampal ensemble code for space.

Authors:  M A Wilson; B L McNaughton
Journal:  Science       Date:  1993-08-20       Impact factor: 47.728

7.  The contributions of position, direction, and velocity to single unit activity in the hippocampus of freely-moving rats.

Authors:  B L McNaughton; C A Barnes; J O'Keefe
Journal:  Exp Brain Res       Date:  1983       Impact factor: 1.972

8.  Network dynamics underlying the formation of sparse, informative representations in the hippocampus.

Authors:  Mattias P Karlsson; Loren M Frank
Journal:  J Neurosci       Date:  2008-12-24       Impact factor: 6.167

9.  Bayesian decoding using unsorted spikes in the rat hippocampus.

Authors:  Fabian Kloosterman; Stuart P Layton; Zhe Chen; Matthew A Wilson
Journal:  J Neurophysiol       Date:  2013-10-02       Impact factor: 2.714

10.  Massively parallel recording of unit and local field potentials with silicon-based electrodes.

Authors:  Jozsef Csicsvari; Darrell A Henze; Brian Jamieson; Kenneth D Harris; Anton Sirota; Péter Barthó; Kensall D Wise; György Buzsáki
Journal:  J Neurophysiol       Date:  2003-08       Impact factor: 2.714

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  10 in total

1.  Real-Time Readout of Large-Scale Unsorted Neural Ensemble Place Codes.

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Journal:  Cell Rep       Date:  2018-12-04       Impact factor: 9.423

2.  Methods for Assessment of Memory Reactivation.

Authors:  Shizhao Liu; Andres D Grosmark; Zhe Chen
Journal:  Neural Comput       Date:  2018-04-13       Impact factor: 2.026

Review 3.  The role of replay and theta sequences in mediating hippocampal-prefrontal interactions for memory and cognition.

Authors:  Mark C Zielinski; Wenbo Tang; Shantanu P Jadhav
Journal:  Hippocampus       Date:  2018-01-11       Impact factor: 3.899

4.  Sub-second dynamics of theta-gamma coupling in hippocampal CA1.

Authors:  Lu Zhang; John Lee; Christopher Rozell; Annabelle C Singer
Journal:  Elife       Date:  2019-07-29       Impact factor: 8.140

5.  Hippocampal replay reflects specific past experiences rather than a plan for subsequent choice.

Authors:  Anna K Gillespie; Daniela A Astudillo Maya; Eric L Denovellis; Daniel F Liu; David B Kastner; Michael E Coulter; Demetris K Roumis; Uri T Eden; Loren M Frank
Journal:  Neuron       Date:  2021-08-26       Impact factor: 18.688

6.  A Variable Clock Underlies Internally Generated Hippocampal Sequences.

Authors:  Xinyi Deng; Shizhe Chen; Marielena Sosa; Mattias P Karlsson; Xue-Xin Wei; Loren M Frank
Journal:  J Neurosci       Date:  2022-03-29       Impact factor: 6.167

7.  Advanced age has dissociable effects on hippocampal CA1 ripples and CA3 high frequency events in male rats.

Authors:  Nicholas M DiCola; Alexa L Lacy; Omar J Bishr; Kathryn M Kimsey; Jenna L Whitney; Sarah D Lovett; Sara N Burke; Andrew P Maurer
Journal:  Neurobiol Aging       Date:  2022-05-05       Impact factor: 5.133

8.  Neural Representation. A Survey-Based Analysis of the Notion.

Authors:  Oscar Vilarroya
Journal:  Front Psychol       Date:  2017-08-29

9.  Real-time classification of experience-related ensemble spiking patterns for closed-loop applications.

Authors:  Davide Ciliberti; Frédéric Michon; Fabian Kloosterman
Journal:  Elife       Date:  2018-10-30       Impact factor: 8.140

Review 10.  The hippocampal sharp wave-ripple in memory retrieval for immediate use and consolidation.

Authors:  Hannah R Joo; Loren M Frank
Journal:  Nat Rev Neurosci       Date:  2018-12       Impact factor: 34.870

  10 in total

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