Literature DB >> 29652580

Methods for Assessment of Memory Reactivation.

Shizhao Liu1, Andres D Grosmark2, Zhe Chen3.   

Abstract

It has been suggested that reactivation of previously acquired experiences or stored information in declarative memories in the hippocampus and neocortex contributes to memory consolidation and learning. Understanding memory consolidation depends crucially on the development of robust statistical methods for assessing memory reactivation. To date, several statistical methods have seen established for assessing memory reactivation based on bursts of ensemble neural spike activity during offline states. Using population-decoding methods, we propose a new statistical metric, the weighted distance correlation, to assess hippocampal memory reactivation (i.e., spatial memory replay) during quiet wakefulness and slow-wave sleep. The new metric can be combined with an unsupervised population decoding analysis, which is invariant to latent state labeling and allows us to detect statistical dependency beyond linearity in memory traces. We validate the new metric using two rat hippocampal recordings in spatial navigation tasks. Our proposed analysis framework may have a broader impact on assessing memory reactivations in other brain regions under different behavioral tasks.

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Mesh:

Year:  2018        PMID: 29652580      PMCID: PMC8014310          DOI: 10.1162/neco_a_01090

Source DB:  PubMed          Journal:  Neural Comput        ISSN: 0899-7667            Impact factor:   2.026


  47 in total

Review 1.  Hippocampal replay in the awake state: a potential substrate for memory consolidation and retrieval.

Authors:  Margaret F Carr; Shantanu P Jadhav; Loren M Frank
Journal:  Nat Neurosci       Date:  2011-02       Impact factor: 24.884

2.  Memory of sequential experience in the hippocampus during slow wave sleep.

Authors:  Albert K Lee; Matthew A Wilson
Journal:  Neuron       Date:  2002-12-19       Impact factor: 17.173

Review 3.  Probabilistic interpretation of population codes.

Authors:  R S Zemel; P Dayan; A Pouget
Journal:  Neural Comput       Date:  1998-02-15       Impact factor: 2.026

4.  Hippocampal replay captures the unique topological structure of a novel environment.

Authors:  Xiaojing Wu; David J Foster
Journal:  J Neurosci       Date:  2014-05-07       Impact factor: 6.167

5.  Replay of neuronal firing sequences in rat hippocampus during sleep following spatial experience.

Authors:  W E Skaggs; B L McNaughton
Journal:  Science       Date:  1996-03-29       Impact factor: 47.728

6.  A Bayesian nonparametric approach for uncovering rat hippocampal population codes during spatial navigation.

Authors:  Scott W Linderman; Matthew J Johnson; Matthew A Wilson; Zhe Chen
Journal:  J Neurosci Methods       Date:  2016-02-05       Impact factor: 2.390

7.  The neural correlates of dreaming.

Authors:  Francesca Siclari; Benjamin Baird; Lampros Perogamvros; Giulio Bernardi; Joshua J LaRocque; Brady Riedner; Melanie Boly; Bradley R Postle; Giulio Tononi
Journal:  Nat Neurosci       Date:  2017-04-10       Impact factor: 24.884

8.  REM Sleep Is Causal to Successful Consolidation of Dangerous and Safety Stimuli and Reduces Return of Fear after Extinction.

Authors:  Mareike M Menz; Julia S Rihm; Christian Büchel
Journal:  J Neurosci       Date:  2016-02-17       Impact factor: 6.167

9.  Hippocampal place-cell sequences depict future paths to remembered goals.

Authors:  Brad E Pfeiffer; David J Foster
Journal:  Nature       Date:  2013-04-17       Impact factor: 49.962

10.  Uncovering representations of sleep-associated hippocampal ensemble spike activity.

Authors:  Zhe Chen; Andres D Grosmark; Hector Penagos; Matthew A Wilson
Journal:  Sci Rep       Date:  2016-08-30       Impact factor: 4.379

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  4 in total

1.  Real-Time Readout of Large-Scale Unsorted Neural Ensemble Place Codes.

Authors:  Sile Hu; Davide Ciliberti; Andres D Grosmark; Frédéric Michon; Daoyun Ji; Hector Penagos; György Buzsáki; Matthew A Wilson; Fabian Kloosterman; Zhe Chen
Journal:  Cell Rep       Date:  2018-12-04       Impact factor: 9.423

Review 2.  On the methods for reactivation and replay analysis.

Authors:  David Tingley; Adrien Peyrache
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2020-04-06       Impact factor: 6.237

3.  Efficient Position Decoding Methods Based on Fluorescence Calcium Imaging in the Mouse Hippocampus.

Authors:  Mengyu Tu; Ruohe Zhao; Avital Adler; Wen-Biao Gan; Zhe S Chen
Journal:  Neural Comput       Date:  2020-04-28       Impact factor: 2.026

4.  Uncovering spatial representations from spatiotemporal patterns of rodent hippocampal field potentials.

Authors:  Liang Cao; Viktor Varga; Zhe S Chen
Journal:  Cell Rep Methods       Date:  2021-10-25
  4 in total

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