Literature DB >> 27534817

A Genetically Encoded Probe for Live-Cell Imaging of H4K20 Monomethylation.

Yuko Sato1, Tomoya Kujirai2, Ritsuko Arai3, Haruhiko Asakawa4, Chizuru Ohtsuki4, Naoki Horikoshi2, Kazuo Yamagata5, Jun Ueda6, Takahiro Nagase7, Tokuko Haraguchi8, Yasushi Hiraoka8, Akatsuki Kimura3, Hitoshi Kurumizaka2, Hiroshi Kimura9.   

Abstract

Eukaryotic gene expression is regulated in the context of chromatin. Dynamic changes in post-translational histone modification are thought to play key roles in fundamental cellular functions such as regulation of the cell cycle, development, and differentiation. To elucidate the relationship between histone modifications and cellular functions, it is important to monitor the dynamics of modifications in single living cells. A genetically encoded probe called mintbody (modification-specific intracellular antibody), which is a single-chain variable fragment tagged with a fluorescent protein, has been proposed as a useful visualization tool. However, the efficacy of intracellular expression of antibody fragments has been limited, in part due to different environmental conditions in the cytoplasm compared to the endoplasmic reticulum where secreted proteins such as antibodies are folded. In this study, we have developed a new mintbody specific for histone H4 Lys20 monomethylation (H4K20me1). The specificity of the H4K20me1-mintbody in living cells was verified using yeast mutants and mammalian cells in which this target modification was diminished. Expression of the H4K20me1-mintbody allowed us to monitor the oscillation of H4K20me1 levels during the cell cycle. Moreover, dosage-compensated X chromosomes were visualized using the H4K20me1-mintbody in mouse and nematode cells. Using X-ray crystallography and mutational analyses, we identified critical amino acids that contributed to stabilization and/or proper folding of the mintbody. Taken together, these data provide important implications for future studies aimed at developing functional intracellular antibodies. Specifically, the H4K20me1-mintbody provides a powerful tool to track this particular histone modification in living cells and organisms.
Copyright © 2016 The Authors. Published by Elsevier Ltd.. All rights reserved.

Entities:  

Keywords:  Histone modification; Inactive X chromosome; Intracellular antibody; Live-cell imaging

Mesh:

Substances:

Year:  2016        PMID: 27534817     DOI: 10.1016/j.jmb.2016.08.010

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  26 in total

Review 1.  Mapping chromatin modifications at the single cell level.

Authors:  Connor H Ludwig; Lacramioara Bintu
Journal:  Development       Date:  2019-06-27       Impact factor: 6.868

2.  Multiplexed Imaging of Posttranslational Modifications of Endogenous Proteins in Live Cells.

Authors:  Yuko Sato; Hiroshi Kimura
Journal:  Methods Mol Biol       Date:  2021

Review 3.  Imaging Translational and Post-Translational Gene Regulatory Dynamics in Living Cells with Antibody-Based Probes.

Authors:  Kenneth Lyon; Timothy J Stasevich
Journal:  Trends Genet       Date:  2017-03-27       Impact factor: 11.639

4.  Semi-quantitative Analysis of H4K20me1 Levels in Living Cells Using Mintbody.

Authors:  Yuko Sato; Hiroshi Kimura
Journal:  Bio Protoc       Date:  2017-05-20

5.  A live imaging system to analyze spatiotemporal dynamics of RNA polymerase II modification in Arabidopsis thaliana.

Authors:  Mio K Shibuta; Takuya Sakamoto; Tamako Yamaoka; Mayu Yoshikawa; Shusuke Kasamatsu; Noriyoshi Yagi; Satoru Fujimoto; Takamasa Suzuki; Satoshi Uchino; Yuko Sato; Hiroshi Kimura; Sachihiro Matsunaga
Journal:  Commun Biol       Date:  2021-05-14

6.  Modular fluorescence complementation sensors for live cell detection of epigenetic signals at endogenous genomic sites.

Authors:  Cristiana Lungu; Sabine Pinter; Julian Broche; Philipp Rathert; Albert Jeltsch
Journal:  Nat Commun       Date:  2017-09-21       Impact factor: 14.919

7.  Metabolic labeling in middle-down proteomics allows for investigation of the dynamics of the histone code.

Authors:  Simone Sidoli; Congcong Lu; Mariel Coradin; Xiaoshi Wang; Kelly R Karch; Chrystian Ruminowicz; Benjamin A Garcia
Journal:  Epigenetics Chromatin       Date:  2017-07-06       Impact factor: 4.954

8.  Reduction in chromosome mobility accompanies nuclear organization during early embryogenesis in Caenorhabditis elegans.

Authors:  Ritsuko Arai; Takeshi Sugawara; Yuko Sato; Yohei Minakuchi; Atsushi Toyoda; Kentaro Nabeshima; Hiroshi Kimura; Akatsuki Kimura
Journal:  Sci Rep       Date:  2017-06-16       Impact factor: 4.379

9.  Live imaging of H3K9 acetylation in plant cells.

Authors:  Kazuki Kurita; Takuya Sakamoto; Noriyoshi Yagi; Yuki Sakamoto; Akihiro Ito; Norikazu Nishino; Kaori Sako; Minoru Yoshida; Hiroshi Kimura; Motoaki Seki; Sachihiro Matsunaga
Journal:  Sci Rep       Date:  2017-04-18       Impact factor: 4.379

Review 10.  Epigenetic differences between naïve and primed pluripotent stem cells.

Authors:  Saori Takahashi; Shin Kobayashi; Ichiro Hiratani
Journal:  Cell Mol Life Sci       Date:  2017-11-13       Impact factor: 9.261

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