Literature DB >> 27527986

Enhancing the Sensitivity of CPMG Relaxation Dispersion to Conformational Exchange Processes by Multiple-Quantum Spectroscopy.

Tairan Yuwen1, Pramodh Vallurupalli2, Lewis E Kay3,4.   

Abstract

A triple-quantum (1) H Carr-Purcell-Meiboom-Gill NMR relaxation dispersion experiment is presented that uses methyl group probes as reporters of conformational exchange in highly deuterated, methyl-protonated proteins. Significantly larger dispersion profiles, by as much as a factor of nine, can be obtained relative to single-quantum approaches, thus offering very significant advantages in applications involving interconverting conformers with only small changes in structure or in studies of rare states that are at very low populations. Applications to a number of protein systems are presented where the utility of the method, including its improved sensitivity to chemical exchange processes, is established.
© 2016 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Keywords:  NMR spectroscopy; conformational dynamics; isotopic labeling; proteins

Year:  2016        PMID: 27527986     DOI: 10.1002/anie.201605843

Source DB:  PubMed          Journal:  Angew Chem Int Ed Engl        ISSN: 1433-7851            Impact factor:   15.336


  14 in total

Review 1.  Applications of NMR and computational methodologies to study protein dynamics.

Authors:  Chitra Narayanan; Khushboo Bafna; Louise D Roux; Pratul K Agarwal; Nicolas Doucet
Journal:  Arch Biochem Biophys       Date:  2017-05-05       Impact factor: 4.013

2.  Measuring the signs of the methyl 1H chemical shift differences between major and 'invisible' minor protein conformational states using methyl 1H multi-quantum spectroscopy.

Authors:  Anusha B Gopalan; Pramodh Vallurupalli
Journal:  J Biomol NMR       Date:  2018-03-21       Impact factor: 2.835

3.  Revisiting 1HN CPMG relaxation dispersion experiments: a simple modification can eliminate large artifacts.

Authors:  Tairan Yuwen; Lewis E Kay
Journal:  J Biomol NMR       Date:  2019-10-23       Impact factor: 2.835

Review 4.  Relaxing with liquids and solids - A perspective on biomolecular dynamics.

Authors:  Paul Schanda
Journal:  J Magn Reson       Date:  2019-07-11       Impact factor: 2.229

Review 5.  Emerging solution NMR methods to illuminate the structural and dynamic properties of proteins.

Authors:  Haribabu Arthanari; Koh Takeuchi; Abhinav Dubey; Gerhard Wagner
Journal:  Curr Opin Struct Biol       Date:  2019-07-19       Impact factor: 6.809

6.  Probing slow timescale dynamics in proteins using methyl 1H CEST.

Authors:  Tairan Yuwen; Rui Huang; Lewis E Kay
Journal:  J Biomol NMR       Date:  2017-06-24       Impact factor: 2.835

7.  NMR Relaxation Dispersion Methods for the Structural and Dynamic Analysis of Quickly Interconverting, Low-Populated Conformational Substates.

Authors:  Sivanandam Veeramuthu Natarajan; Nicola D'Amelio; Victor Muñoz
Journal:  Methods Mol Biol       Date:  2022

8.  A methyl 1H double quantum CPMG experiment to study protein conformational exchange.

Authors:  Anusha B Gopalan; Tairan Yuwen; Lewis E Kay; Pramodh Vallurupalli
Journal:  J Biomol NMR       Date:  2018-10-01       Impact factor: 2.835

9.  Structural and hydrodynamic properties of an intrinsically disordered region of a germ cell-specific protein on phase separation.

Authors:  Jacob P Brady; Patrick J Farber; Ashok Sekhar; Yi-Hsuan Lin; Rui Huang; Alaji Bah; Timothy J Nott; Hue Sun Chan; Andrew J Baldwin; Julie D Forman-Kay; Lewis E Kay
Journal:  Proc Natl Acad Sci U S A       Date:  2017-09-11       Impact factor: 11.205

Review 10.  Methyl-Based NMR Spectroscopy Methods for Uncovering Structural Dynamics in Large Proteins and Protein Complexes.

Authors:  Zachary K Boswell; Michael P Latham
Journal:  Biochemistry       Date:  2018-10-26       Impact factor: 3.162

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