| Literature DB >> 27524905 |
Xiao Jiang1, Mei Zhang2, Xiao-Yan Bai3, Shujing Li3, Huijian Wu3.
Abstract
BACKGROUND: Genome-wide association studies have identified rs6465657 polymorphism at chromosome 17q25.3 as a new prostate cancer (PCa) susceptibility locus in people of European descent. However, subsequent replication studies have yielded inconsistent results among different ethnicities. In this study, a comprehensive meta-analysis was conducted to systematically evaluate the relationship between rs6465657 polymorphism and PCa risk.Entities:
Keywords: LMTK2; meta-analysis; polymorphism; prostate cancer; risk; rs6465657
Year: 2016 PMID: 27524905 PMCID: PMC4966688 DOI: 10.2147/OTT.S104775
Source DB: PubMed Journal: Onco Targets Ther ISSN: 1178-6930 Impact factor: 4.147
Figure 1Flow diagram of meta-analysis for exclusion or inclusion of individual articles.
Characteristics of studies included in the meta-analysis for the association between the 7q25.3-rs6465657 polymorphisms and PCa risk
| Study | Country | Ethnicity | Sample size
| Median age (range)
| Source of controls | Genotyping method | RAF in controls (%) | ||
|---|---|---|---|---|---|---|---|---|---|
| Patients | Controls | Patients | Controls | ||||||
| Eeles et al | Britain | Caucasian | 1,854 | 1,894 | 36–88 | 50–71 | PB | TaqMan | 0.443 |
| Eeles et al | Australia | Caucasian | 3,268 | 3,366 | 36–89 | Match | PB | TaqMan | 0.463 |
| Kote-Jarai et al | USA, Canada, Britain, Germany, Switzerland | Multi-ethnicity | 7,370 | 5,742 | 35–87 | 35–87 | PB and HB | TaqMan; Sequenom; SNPLex genotyping system | 0.48 |
| Waters et al | USA | African-American | 860 | 575 | 44–78 | 45–77 | PB | Allelic discrimination assay | 0.85 |
| Waters et al | North America | Multi-ethnicity | 603 | 572 | 44–78 | 45–77 | PB | Allelic discrimination assay | 0.7 |
| Waters et al | Hawaii | Multi-ethnicity | 112 | 109 | 44–78 | 45–77 | PB | Allelic discrimination assay | 0.67 |
| Waters et al | Europe | Caucasian | 468 | 419 | 44–78 | 45–77 | PB | Allelic discrimination assay | 0.45 |
| Waters et al | USA | Asian | 725 | 684 | 44–78 | 45–77 | PB | Allelic discrimination assay | 0.9 |
| Gudmundsson et al | Iceland | Caucasian | 1,724 | 35,358 | 40–96 | 8–105 | PB | Illumina HumanHap300 SNP chip | 0.421 |
| Yamada et al | Japan | Asian | 311 | 1,035 | 47–85 | Match | HB | Sequenom | 0.89 |
| Zheng et al | People’s Republic of China | Asian | 288 | 155 | >18 | Match | PB | Sequenom | 0.86 |
| Hooker et al | USA | African-American | 454 | 301 | 40–85 | Match | HB | Sequenom | 0.86 |
| Liu et al | People’s Republic of China | Asian | 820 | 1,370 | 34–100 | Match | PB | Sequenom | 0.857 |
| Lindstrom et al | USA | Caucasian | 9,994 | 10,465 | 59.1–77.1 | 45.6–77.9 | PB | TaqMan | 0.46 |
| Lange et al | USA | Caucasian | 754 | 2,713 | 49.8±3.9 | Match | PB | TaqMan, Illumina’s HumanHap550 | 0.451 |
| Bentzon et al | Denmark | Caucasian | 648 | 526 | 36–77 | Match | HB | Sequenom | 0.47 |
| Klein et al | USA, Sweden | Caucasian | 891 | 2,521 | 51–73 | 51–73 | PB | Sequenom | 0.48 |
| Wang et al | People’s Republic of China | Asian | 124 | 138 | 51–86 | 60–88 | PB | qRT-PCR | 0.873 |
| Shui et al | Europe | Caucasian | 10,487 | 11,024 | 68.6±6.8 | 66.8±8.5 | PB | TaqMan | 0.46 |
Abbreviations: PCa, prostate cancer; RAF, risk allele frequency; HB, hospital based; PB, population based.
Quality assessment of the eligible studies based on NOSa
| Study | Selection
| Comparability | Exposure
| Total | |||||
|---|---|---|---|---|---|---|---|---|---|
| Definition | Representativeness | Selection | Definition | Ascertainment | Method | Rate | |||
| Eeles et al | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 0 | 7 |
| Kote-Jarai et al | 1 | 1 | 0 | 1 | 1 | 1 | 1 | 0 | 6 |
| Waters et al | 1 | 1 | 1 | 1 | 0 | 1 | 1 | 0 | 6 |
| Gudmundsson et al | 1 | 1 | 1 | 1 | 2 | 1 | 1 | 0 | 8 |
| Yamada et al | 1 | 1 | 0 | 1 | 1 | 1 | 1 | 0 | 6 |
| Zheng et al | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 0 | 7 |
| Hooker et al | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 0 | 7 |
| Liu et al | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 0 | 7 |
| Lindstrom et al | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 8 |
| Lange et al | 1 | 1 | 1 | 1 | 2 | 1 | 1 | 0 | 8 |
| Bentzon et al | 1 | 1 | 0 | 1 | 2 | 1 | 1 | 0 | 7 |
| Klein et al | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 0 | 7 |
| Wang et al | 1 | 1 | 1 | 1 | 2 | 1 | 1 | 0 | 8 |
| Shui et al | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 0 | 7 |
Notes:
Assessed with the 9-star NOS;
Adequate definition of cases (0, 1);
Consecutive or obviously representative series of cases (0, 1);
Selection of controls: Community controls (0, 1);
Definition of controls: No history of disease (0, 1);
Study controls for the most important factor or any additional factor (0, 1, 2);
Secure record (0, 1);
Same method of ascertainment for cases and controls (0, 1);
Same nonresponse rate for both groups (0, 1).
Abbreviation: NOS, Newcastle–Ottawa scale.
Figure 2Frequencies of the C risk allele of 17q25.3-rs6465657 among controls stratified by ethnicity.
Note: Weights are from random-effects analysis.
Abbreviations: CI, confidence interval; RAF, risk allele frequency.
Figure 3Forest plot for association of 17q25.3-rs6465657 polymorphism and PCa risk.
Note: Weights are from random-effects analysis.
Abbreviations: OR, odds ratio; CI, confidence interval; PCa, prostate cancer.
Results of meta-analysis for 17q25.3-rs6465657 polymorphism with PCa riskl
| Total and subgroups | Number of studies | Sample sizes
| Test of heterogeneity
| Test of association
| ||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Patients | Controls | OR | 95% CI | |||||||
| Total | 19 | 41,755 | 78,967 | 33.33 | 0.02 | 46.0 | 1.097 | 1.061–1.134 | 5.44 | 0.000 |
| Ethnicity | ||||||||||
| Caucasian | 9 | 30,088 | 68,286 | 16.41 | 0.04 | 51.3 | 1.120 | 1.078–1.162 | 5.91 | 0.000 |
| Asian | 5 | 2,268 | 3,382 | 3.49 | 0.48 | 0.0 | 1.036 | 0.922–1.165 | 0.6 | 0.550 |
| African-American | 2 | 1,314 | 876 | 3.25 | 0.07 | 69.3 | 1.072 | 0.752–1.529 | 0.38 | 0.701 |
Note: A P-value<0.05 was considered to be statistically significant.
Abbreviations: PCa, prostate cancer; OR, odds ratio; CI, confidence interval.
Figure 4Sensitivity analysis in the overall population (A) and Caucasian population (B) using the random-effects model.
Notes: This was done to evaluate the influence of each study on the stability of pooled OR by removing one study in turn and recalculating the ORs and 95% CIs. The vertical axis in the middle of the figure represents the pooled OR and the two vertical axes located on either side represent the corresponding 95% CI. Meanwhile, the closed circles are representative of the values of pooled ORs with the study mentioned on the left side of the figure being omitted. The two ends of each dotted line represent its corresponding 95% CI.
Abbreviations: CI, confidence interval; OR, odds ratio.