Literature DB >> 27507291

Successful completion of a semi-automated enzyme-free cloning method.

Stefano Bonacci1, Scilla Buccato2, Domenico Maione2, Roberto Petracca2.   

Abstract

Nowadays, in scientific fields such as Structural Biology or Vaccinology, there is an increasing need of fast, effective and reproducible gene cloning and expression processes. Consequently, the implementation of robotic platforms enabling the automation of protocols is becoming a pressing demand. The main goal of our study was to set up a robotic platform devoted to the high-throughput automation of the polymerase incomplete primer extension cloning method, and to evaluate its efficiency compared to that achieved manually, by selecting a set of bacterial genes that were processed either in the automated platform (330) or manually (94). Here we show that we successfully set up a platform able to complete, with high efficiency, a wide range of molecular biology and biochemical steps. 329 gene targets (99 %) were effectively amplified using the automated procedure and 286 (87 %) of these PCR products were successfully cloned in expression vectors, with cloning success rates being higher for the automated protocols respect to the manual procedure (93.6 and 74.5 %, respectively).

Entities:  

Keywords:  Cloning; Genomics; High-throughput; Integrated robotic workstation; Laboratory automation; Mutagenesis

Mesh:

Year:  2016        PMID: 27507291     DOI: 10.1007/s10969-016-9207-z

Source DB:  PubMed          Journal:  J Struct Funct Genomics        ISSN: 1345-711X


  43 in total

1.  GATEWAY recombinational cloning: application to the cloning of large numbers of open reading frames or ORFeomes.

Authors:  A J Walhout; G F Temple; M A Brasch; J L Hartley; M A Lorson; S van den Heuvel; M Vidal
Journal:  Methods Enzymol       Date:  2000       Impact factor: 1.600

Review 2.  Reverse vaccinology: a genome-based approach for vaccine development.

Authors:  Vega Masignani; Rino Rappuoli; Mariagrazia Pizza
Journal:  Expert Opin Biol Ther       Date:  2002-12       Impact factor: 4.388

3.  Methods and results for semi-automated cloning using integrated robotics.

Authors:  Heath E Klock; Aprilfawn White; Eric Koesema; Scott A Lesley
Journal:  J Struct Funct Genomics       Date:  2005

4.  Enzyme free cloning for high throughput gene cloning and expression.

Authors:  Rob N de Jong; Mark A Daniëls; Rob Kaptein; Gert E Folkers
Journal:  J Struct Funct Genomics       Date:  2007-02-13

5.  Combining the polymerase incomplete primer extension method for cloning and mutagenesis with microscreening to accelerate structural genomics efforts.

Authors:  Heath E Klock; Eric J Koesema; Mark W Knuth; Scott A Lesley
Journal:  Proteins       Date:  2008-05-01

6.  Computer-aided high-throughput cloning of bacteria in liquid medium.

Authors:  Tuval Ben Yehezkel; Shiran Nagar; Danny Mackrants; Zipora Marx; Gregory Linshiz; Uri Shabi; Ehud Shapiro
Journal:  Biotechniques       Date:  2011-02       Impact factor: 1.993

7.  Vaccines, reverse vaccinology, and bacterial pathogenesis.

Authors:  Isabel Delany; Rino Rappuoli; Kate L Seib
Journal:  Cold Spring Harb Perspect Med       Date:  2013-05-01       Impact factor: 6.915

8.  Approaches to automated protein crystal harvesting.

Authors:  Marc C Deller; Bernhard Rupp
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2014-01-28       Impact factor: 1.056

9.  High-throughput, automated extraction of DNA and RNA from clinical samples using TruTip technology on common liquid handling robots.

Authors:  Rebecca C Holmberg; Alissa Gindlesperger; Tinsley Stokes; Dane Brady; Nitu Thakore; Philip Belgrader; Christopher G Cooney; Darrell P Chandler
Journal:  J Vis Exp       Date:  2013-06-11       Impact factor: 1.355

Review 10.  Vaccines for the 21st century.

Authors:  Isabel Delany; Rino Rappuoli; Ennio De Gregorio
Journal:  EMBO Mol Med       Date:  2014-04-06       Impact factor: 12.137

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  1 in total

1.  Genome-Based Approach Delivers Vaccine Candidates Against Pseudomonas aeruginosa.

Authors:  Irene Bianconi; Beatriz Alcalá-Franco; Maria Scarselli; Mattia Dalsass; Scilla Buccato; Annalisa Colaprico; Sara Marchi; Vega Masignani; Alessandra Bragonzi
Journal:  Front Immunol       Date:  2019-01-09       Impact factor: 7.561

  1 in total

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