Literature DB >> 27492417

Genomic and functional features of the biosurfactant producing Bacillus sp. AM13.

Shraddha Shaligram1,2, Shreyas V Kumbhare2, Dhiraj P Dhotre2, Manohar G Muddeshwar3, Atya Kapley4, Neetha Joseph2, Hemant P Purohit4, Yogesh S Shouche2, Shrikant P Pawar5.   

Abstract

Genomic studies provide deeper insights into secondary metabolites produced by diverse bacterial communities, residing in various environmental niches. This study aims to understand the potential of a biosurfactant producing Bacillus sp. AM13, isolated from soil. An integrated approach of genomic and chemical analysis was employed to characterize the antibacterial lipopeptide produced by the strain AM13. Genome analysis revealed that strain AM13 harbors a nonribosomal peptide synthetase (NRPS) cluster; highly similar with known biosynthetic gene clusters from surfactin family: lichenysin (85 %) and surfactin (78 %). These findings were substantiated with supplementary experiments of oil displacement assay and surface tension measurements, confirming the biosurfactant production. Further investigation using LCMS approach exhibited similarity of the biomolecule with biosurfactants of the surfactin family. Our consolidated effort of functional genomics provided chemical as well as genetic leads for understanding the biochemical characteristics of the bioactive compound.

Entities:  

Keywords:  Bacillus genome; Bacterial natural products; Biosurfactant; Lipopeptides; NRPS

Mesh:

Substances:

Year:  2016        PMID: 27492417     DOI: 10.1007/s10142-016-0506-z

Source DB:  PubMed          Journal:  Funct Integr Genomics        ISSN: 1438-793X            Impact factor:   3.410


  47 in total

1.  Rhodanobacter denitrificans sp. nov., isolated from nitrate-rich zones of a contaminated aquifer.

Authors:  Om Prakash; Stefan J Green; Puja Jasrotia; Will A Overholt; Andy Canion; David B Watson; Scott C Brooks; Joel E Kostka
Journal:  Int J Syst Evol Microbiol       Date:  2011-11-25       Impact factor: 2.747

Review 2.  Microbial genomics for the improvement of natural product discovery.

Authors:  Steven G Van Lanen; Ben Shen
Journal:  Curr Opin Microbiol       Date:  2006-05-02       Impact factor: 7.934

3.  Genomics-driven discovery of PKS-NRPS hybrid metabolites from Aspergillus nidulans.

Authors:  Sebastian Bergmann; Julia Schümann; Kirstin Scherlach; Corinna Lange; Axel A Brakhage; Christian Hertweck
Journal:  Nat Chem Biol       Date:  2007-03-18       Impact factor: 15.040

Review 4.  Bacillus lipopeptides: versatile weapons for plant disease biocontrol.

Authors:  Marc Ongena; Philippe Jacques
Journal:  Trends Microbiol       Date:  2008-03       Impact factor: 17.079

Review 5.  Methods for investigating biosurfactants and bioemulsifiers: a review.

Authors:  Surekha K Satpute; Arun G Banpurkar; Prashant K Dhakephalkar; Ibrahim M Banat; Balu A Chopade
Journal:  Crit Rev Biotechnol       Date:  2010-06       Impact factor: 8.429

6.  PHAST: a fast phage search tool.

Authors:  You Zhou; Yongjie Liang; Karlene H Lynch; Jonathan J Dennis; David S Wishart
Journal:  Nucleic Acids Res       Date:  2011-06-14       Impact factor: 16.971

7.  ISfinder: the reference centre for bacterial insertion sequences.

Authors:  P Siguier; J Perochon; L Lestrade; J Mahillon; M Chandler
Journal:  Nucleic Acids Res       Date:  2006-01-01       Impact factor: 16.971

Review 8.  Genome mining: Prediction of lipopeptides and polyketides from Bacillus and related Firmicutes.

Authors:  Gajender Aleti; Angela Sessitsch; Günter Brader
Journal:  Comput Struct Biotechnol J       Date:  2015-03-24       Impact factor: 7.271

9.  A high-resolution LC-MS-based secondary metabolite fingerprint database of marine bacteria.

Authors:  Liang Lu; Jijie Wang; Ying Xu; Kailing Wang; Yingwei Hu; Renmao Tian; Bo Yang; Qiliang Lai; Yongxin Li; Weipeng Zhang; Zongze Shao; Henry Lam; Pei-Yuan Qian
Journal:  Sci Rep       Date:  2014-10-09       Impact factor: 4.379

10.  Complete genome sequence of the industrial bacterium Bacillus licheniformis and comparisons with closely related Bacillus species.

Authors:  Michael W Rey; Preethi Ramaiya; Beth A Nelson; Shari D Brody-Karpin; Elizabeth J Zaretsky; Maria Tang; Alfredo Lopez de Leon; Henry Xiang; Veronica Gusti; Ib Groth Clausen; Peter B Olsen; Michael D Rasmussen; Jens T Andersen; Per L Jørgensen; Thomas S Larsen; Alexei Sorokin; Alexander Bolotin; Alla Lapidus; Nathalie Galleron; S Dusko Ehrlich; Randy M Berka
Journal:  Genome Biol       Date:  2004-09-13       Impact factor: 13.583

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  6 in total

1.  Genome annotation and comparative genomic analysis of Bacillus subtilis MJ01, a new bio-degradation strain isolated from oil-contaminated soil.

Authors:  Touraj Rahimi; Ali Niazi; Tahereh Deihimi; Seyed Mohsen Taghavi; Shahab Ayatollahi; Esmaeil Ebrahimie
Journal:  Funct Integr Genomics       Date:  2018-05-05       Impact factor: 3.410

2.  Genome sequence and comparative analysis of Bacillus cereus BC04, reveals genetic diversity and alterations for antimicrobial resistance.

Authors:  Vijaya Bharathi Srinivasan; Mahavinod Angrasan; Neha Chandel; Govindan Rajamohan
Journal:  Funct Integr Genomics       Date:  2018-04-04       Impact factor: 3.410

3.  Genomic Insights of Halophilic Planococcus maritimus SAMP MCC 3013 and Detail Investigation of Its Biosurfactant Production.

Authors:  Samadhan Waghmode; Mangesh Suryavanshi; Laxmikant Dama; Shraddha Kansara; Vikas Ghattargi; Parijat Das; Arun Banpurkar; Surekha K Satpute
Journal:  Front Microbiol       Date:  2019-02-26       Impact factor: 5.640

4.  Whole Genome Sequencing and Root Colonization Studies Reveal Novel Insights in the Biocontrol Potential and Growth Promotion by Bacillus subtilis MBI 600 on Cucumber.

Authors:  Anastasios Samaras; Marios Nikolaidis; Maria Luisa Antequera-Gómez; Jesus Cámara-Almirón; Diego Romero; Thomas Moschakis; Grigoris D Amoutzias; Georgios S Karaoglanidis
Journal:  Front Microbiol       Date:  2021-01-12       Impact factor: 5.640

5.  Bacteria Halotolerant from Karst Sinkholes as a Source of Biosurfactants and Bioemulsifiers.

Authors:  Félix Maldonado Desena; Navila De la Cruz Ceferino; Sergio Gómez Cornelio; Carina Alvarez Villagomez; José Luis Herrera Candelario; Susana De la Rosa García
Journal:  Microorganisms       Date:  2022-06-21

6.  Draft genome sequence and potential identification of a biosurfactant from Brevibacterium casei strain LS14 an isolate from fresh water Loktak Lake.

Authors:  Khushbu Kumari; Sudhanshu K Gouda; Ananta N Panda; Lopamudra Ray; Dinabandhu Sahoo; Tanmaya Nayak; Vipin Gupta; Vishakha Raina
Journal:  3 Biotech       Date:  2021-06-11       Impact factor: 2.893

  6 in total

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