Literature DB >> 27487931

Crystal structure of AibC, a reductase involved in alternative de novo isovaleryl coenzyme A biosynthesis in Myxococcus xanthus.

Tobias Bock1, Rolf Müller2, Wulf Blankenfeldt1.   

Abstract

Isovaleryl coenzyme A (IV-CoA) performs a crucial role during development and fruiting-body formation in myxobacteria, which is reflected in the existence of a de novo biosynthetic pathway that is highly upregulated when leucine, the common precursor of IV-CoA, is limited. The final step in de novo IV-CoA biosynthesis is catalyzed by AibC, a medium-chain dehydrogenase/reductase. Here, the crystal structure of AibC from Myxococcus xanthus refined to 2.55 Å resolution is presented. The protein adopts two different conformations in the crystal lattice, which is a consequence of partial interaction with the purification tag. Based on this structure, it is suggested that AibC most probably uses a Zn(2+)-supported catalytic mechanism in which NADPH is preferred over NADH. Taken together, this study reveals structural details of the alternative IV-CoA-producing pathway in myxobacteria, which may serve as a base for further biotechnological research and biofuel production.

Entities:  

Keywords:  Myxococcus xanthus; TEV protease-recognition sequence; alternative isovaleryl coenzyme A biosynthesis; hexahistidine tag; medium-chain dehydrogenase/reductase; zinc-dependence

Mesh:

Substances:

Year:  2016        PMID: 27487931      PMCID: PMC4973308          DOI: 10.1107/S2053230X16011146

Source DB:  PubMed          Journal:  Acta Crystallogr F Struct Biol Commun        ISSN: 2053-230X            Impact factor:   1.056


  33 in total

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Review 3.  Alcohol dehydrogenases from thermophilic and hyperthermophilic archaea and bacteria.

Authors:  Helia Radianingtyas; Phillip C Wright
Journal:  FEMS Microbiol Rev       Date:  2003-12       Impact factor: 16.408

4.  Metabolic deficiencies in alcohol dehydrogenase Adh1, Adh3, and Adh4 null mutant mice. Overlapping roles of Adh1 and Adh4 in ethanol clearance and metabolism of retinol to retinoic acid.

Authors:  L Deltour; M H Foglio; G Duester
Journal:  J Biol Chem       Date:  1999-06-11       Impact factor: 5.157

5.  Novel iso-branched ether lipids as specific markers of developmental sporulation in the myxobacterium Myxococcus xanthus.

Authors:  Michael W Ring; Gertrud Schwär; Verena Thiel; Jeroen S Dickschat; Reiner M Kroppenstedt; Stefan Schulz; Helge B Bode
Journal:  J Biol Chem       Date:  2006-09-20       Impact factor: 5.157

6.  Structure of human biliverdin IXbeta reductase, an early fetal bilirubin IXbeta producing enzyme.

Authors:  P J Pereira; S Macedo-Ribeiro; A Párraga; R Pérez-Luque; O Cunningham; K Darcy; T J Mantle; M Coll
Journal:  Nat Struct Biol       Date:  2001-03

7.  Kinetic mechanism of human glutathione-dependent formaldehyde dehydrogenase.

Authors:  P C Sanghani; C L Stone; B D Ray; E V Pindel; T D Hurley; W F Bosron
Journal:  Biochemistry       Date:  2000-09-05       Impact factor: 3.162

8.  3-Hydroxy-3-methylglutaryl-coenzyme A (CoA) synthase is involved in biosynthesis of isovaleryl-CoA in the myxobacterium Myxococcus xanthus during fruiting body formation.

Authors:  Helge B Bode; Michael W Ring; Gertrud Schwär; Reiner M Kroppenstedt; Dale Kaiser; Rolf Müller
Journal:  J Bacteriol       Date:  2006-09       Impact factor: 3.490

9.  The ternary complex of Pseudomonas aeruginosa alcohol dehydrogenase with NADH and ethylene glycol.

Authors:  Inna Levin; Gal Meiri; Moshe Peretz; Yigal Burstein; Felix Frolow
Journal:  Protein Sci       Date:  2004-06       Impact factor: 6.725

10.  Hyperthermophilic dehydrogenase enzymes.

Authors:  J A Littlechild; J E Guy; M N Isupov
Journal:  Biochem Soc Trans       Date:  2004-04       Impact factor: 5.407

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