Literature DB >> 27487927

Crystal structures of a subunit of the formylglycinamide ribonucleotide amidotransferase, PurS, from Thermus thermophilus, Sulfolobus tokodaii and Methanocaldococcus jannaschii.

Yuzo Watanabe1, Hisaaki Yanai2, Mayumi Kanagawa2, Sakiko Suzuki1, Satoko Tamura1, Kiyoshi Okada3, Seiki Baba4, Takashi Kumasaka4, Yoshihiro Agari2, Lirong Chen5, Zheng Qing Fu5, John Chrzas5, Bi Cheng Wang5, Noriko Nakagawa6, Akio Ebihara2, Ryoji Masui6, Seiki Kuramitsu6, Shigeyuki Yokoyama2, Gen Ichi Sampei2, Gota Kawai1.   

Abstract

The crystal structures of a subunit of the formylglycinamide ribonucleotide amidotransferase, PurS, from Thermus thermophilus, Sulfolobus tokodaii and Methanocaldococcus jannaschii were determined and their structural characteristics were analyzed. For PurS from T. thermophilus, two structures were determined using two crystals that were grown in different conditions. The four structures in the dimeric form were almost identical to one another despite their relatively low sequence identities. This is also true for all PurS structures determined to date. A few residues were conserved among PurSs and these are located at the interaction site with PurL and PurQ, the other subunits of the formylglycinamide ribonucleotide amidotransferase. Molecular-dynamics simulations of the PurS dimer as well as a model of the complex of the PurS dimer, PurL and PurQ suggest that PurS plays some role in the catalysis of the enzyme by its bending motion.

Entities:  

Keywords:  Methanocaldococcus jannaschii; PurS; Sulfolobus tokodaii; Thermus thermophilus; crystal structure; formylglycinamide ribonucleotide amidotransferase; purine nucleotide-biosynthetic pathway

Mesh:

Substances:

Year:  2016        PMID: 27487927      PMCID: PMC4973304          DOI: 10.1107/S2053230X1600978X

Source DB:  PubMed          Journal:  Acta Crystallogr F Struct Biol Commun        ISSN: 2053-230X            Impact factor:   1.056


  25 in total

1.  Crystal structure of MTH169, a crucial component of phosphoribosylformylglycinamidine synthetase.

Authors:  Renu Batra; Dinesh Christendat; Aled Edwards; Cheryl Arrowsmith; Liang Tong
Journal:  Proteins       Date:  2002-11-01

2.  UCSF Chimera--a visualization system for exploratory research and analysis.

Authors:  Eric F Pettersen; Thomas D Goddard; Conrad C Huang; Gregory S Couch; Daniel M Greenblatt; Elaine C Meng; Thomas E Ferrin
Journal:  J Comput Chem       Date:  2004-10       Impact factor: 3.376

3.  Structure of N-formylglycinamide ribonucleotide amidotransferase II (PurL) from Thermus thermophilus HB8.

Authors:  Sakiko Suzuki; Hisaaki Yanai; Mayumi Kanagawa; Satoko Tamura; Yuzo Watanabe; Kyotaro Fuse; Seiki Baba; Gen-ichi Sampei; Gota Kawai
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2011-12-24

4.  Biosynthesis of the purines. XXIX. Purification and properties of formylglycinamide ribonucleotide amidotransferase from chicken liver.

Authors:  K Mizobuchi; J M Buchanan
Journal:  J Biol Chem       Date:  1968-09-25       Impact factor: 5.157

5.  Cloning and characterization of a 12-gene cluster from Bacillus subtilis encoding nine enzymes for de novo purine nucleotide synthesis.

Authors:  D J Ebbole; H Zalkin
Journal:  J Biol Chem       Date:  1987-06-15       Impact factor: 5.157

6.  Automated MAD and MIR structure solution.

Authors:  T C Terwilliger; J Berendzen
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1999-04

7.  Domain organization of Salmonella typhimurium formylglycinamide ribonucleotide amidotransferase revealed by X-ray crystallography.

Authors:  Ruchi Anand; Aaron A Hoskins; JoAnne Stubbe; Steven E Ealick
Journal:  Biochemistry       Date:  2004-08-17       Impact factor: 3.162

8.  The formylglycinamide ribonucleotide amidotransferase complex from Bacillus subtilis: metabolite-mediated complex formation.

Authors:  Aaron A Hoskins; Ruchi Anand; Steven E Ealick; JoAnne Stubbe
Journal:  Biochemistry       Date:  2004-08-17       Impact factor: 3.162

9.  A model for the Bacillus subtilis formylglycinamide ribonucleotide amidotransferase multiprotein complex.

Authors:  Ruchi Anand; Aaron A Hoskins; Eric M Bennett; Michael D Sintchak; JoAnne Stubbe; Steven E Ealick
Journal:  Biochemistry       Date:  2004-08-17       Impact factor: 3.162

10.  The Pfam protein families database: towards a more sustainable future.

Authors:  Robert D Finn; Penelope Coggill; Ruth Y Eberhardt; Sean R Eddy; Jaina Mistry; Alex L Mitchell; Simon C Potter; Marco Punta; Matloob Qureshi; Amaia Sangrador-Vegas; Gustavo A Salazar; John Tate; Alex Bateman
Journal:  Nucleic Acids Res       Date:  2015-12-15       Impact factor: 16.971

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.