Literature DB >> 27487923

Structure of the human DNA-repair protein RAD52 containing surface mutations.

Mika Saotome1, Kengo Saito2, Keiichi Onodera2, Hitoshi Kurumizaka2, Wataru Kagawa1.   

Abstract

The Rad52 protein is a eukaryotic single-strand DNA-annealing protein that is involved in the homologous recombinational repair of DNA double-strand breaks. The isolated N-terminal half of the human RAD52 protein (RAD52(1-212)) forms an undecameric ring structure with a surface that is mostly positively charged. In the present study, it was found that RAD52(1-212) containing alanine mutations of the charged surface residues (Lys102, Lys133 and Glu202) is highly amenable to crystallization. The structure of the mutant RAD52(1-212) was solved at 2.4 Å resolution. The structure revealed an association between the symmetry-related RAD52(1-212) rings, in which a partially unfolded, C-terminal region of RAD52 extended into the DNA-binding groove of the neighbouring ring in the crystal. The alanine mutations probably reduced the surface entropy of the RAD52(1-212) ring and stabilized the ring-ring association observed in the crystal.

Entities:  

Keywords:  RAD52; higher order interaction; homologous recombinational repair; single-strand annealing proteins; ssDNA-binding protein; surface-entropy reduction

Mesh:

Substances:

Year:  2016        PMID: 27487923      PMCID: PMC4973300          DOI: 10.1107/S2053230X1601027X

Source DB:  PubMed          Journal:  Acta Crystallogr F Struct Biol Commun        ISSN: 2053-230X            Impact factor:   1.056


  16 in total

1.  Human RAD52 exhibits two modes of self-association.

Authors:  W Ranatunga; D Jackson; J A Lloyd; A L Forget; K L Knight; G E Borgstahl
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3.  Identification of a second DNA binding site in the human Rad52 protein.

Authors:  Wataru Kagawa; Ako Kagawa; Kengo Saito; Shukuko Ikawa; Takehiko Shibata; Hitoshi Kurumizaka; Shigeyuki Yokoyama
Journal:  J Biol Chem       Date:  2008-07-01       Impact factor: 5.157

4.  Crystallography & NMR system: A new software suite for macromolecular structure determination.

Authors:  A T Brünger; P D Adams; G M Clore; W L DeLano; P Gros; R W Grosse-Kunstleve; J S Jiang; J Kuszewski; M Nilges; N S Pannu; R J Read; L M Rice; T Simonson; G L Warren
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1998-09-01

Review 5.  DNA-pairing and annealing processes in homologous recombination and homology-directed repair.

Authors:  Scott W Morrical
Journal:  Cold Spring Harb Perspect Biol       Date:  2015-02-02       Impact factor: 10.005

6.  Precise binding of single-stranded DNA termini by human RAD52 protein.

Authors:  C A Parsons; P Baumann; E Van Dyck; S C West
Journal:  EMBO J       Date:  2000-08-01       Impact factor: 11.598

7.  The impact of Glu-->Ala and Glu-->Asp mutations on the crystallization properties of RhoGDI: the structure of RhoGDI at 1.3 A resolution.

Authors:  Agnieszka Mateja; Yancho Devedjiev; Daniel Krowarsch; Kenton Longenecker; Zbigniew Dauter; Jacek Otlewski; Zygmunt S Derewenda
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2002-11-23

8.  Identification of residues important for DNA binding in the full-length human Rad52 protein.

Authors:  Janice A Lloyd; Dharia A McGrew; Kendall L Knight
Journal:  J Mol Biol       Date:  2005-01-14       Impact factor: 5.469

9.  Features and development of Coot.

Authors:  P Emsley; B Lohkamp; W G Scott; K Cowtan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24

10.  PHENIX: a comprehensive Python-based system for macromolecular structure solution.

Authors:  Paul D Adams; Pavel V Afonine; Gábor Bunkóczi; Vincent B Chen; Ian W Davis; Nathaniel Echols; Jeffrey J Headd; Li-Wei Hung; Gary J Kapral; Ralf W Grosse-Kunstleve; Airlie J McCoy; Nigel W Moriarty; Robert Oeffner; Randy J Read; David C Richardson; Jane S Richardson; Thomas C Terwilliger; Peter H Zwart
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-01-22
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  2 in total

1.  Structural Basis of Homology-Directed DNA Repair Mediated by RAD52.

Authors:  Mika Saotome; Kengo Saito; Takeshi Yasuda; Hideaki Ohtomo; Shusei Sugiyama; Yoshifumi Nishimura; Hitoshi Kurumizaka; Wataru Kagawa
Journal:  iScience       Date:  2018-04-12

2.  Compound F779-0434 causes synthetic lethality in BRCA2-deficient cancer cells by disrupting RAD52-ssDNA association.

Authors:  Jian Li; Qianye Yang; Yang Zhang; Kejia Huang; Rong Sun; Qi Zhao
Journal:  RSC Adv       Date:  2018-05-23       Impact factor: 4.036

  2 in total

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