Literature DB >> 27487394

Catch me if you can: trapping scanning ribosomes in their footsteps.

Pavel V Baranov1, Gary Loughran1.   

Abstract

Mesh：

Year:  2016        PMID： 27487394     DOI： 10.1038/nsmb.3256

Source DB:  PubMed          Journal:  Nat Struct Mol Biol        ISSN： 1545-9985            Impact factor:   15.369


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  25 in total

1.  Ribosome profiling reveals resemblance between long non-coding RNAs and 5' leaders of coding RNAs.

Authors:  Guo-Liang Chew; Andrea Pauli; John L Rinn; Aviv Regev; Alexander F Schier; Eivind Valen
Journal:  Development       Date:  2013-05-22       Impact factor: 6.868

2.  Structure of the mammalian 80S initiation complex with initiation factor 5B on HCV-IRES RNA.

Authors:  Hiroshi Yamamoto; Anett Unbehaun; Justus Loerke; Elmar Behrmann; Marianne Collier; Jörg Bürger; Thorsten Mielke; Christian M T Spahn
Journal:  Nat Struct Mol Biol       Date:  2014-07-27       Impact factor: 15.369

3.  Ribosome profiling provides evidence that large noncoding RNAs do not encode proteins.

Authors:  Mitchell Guttman; Pamela Russell; Nicholas T Ingolia; Jonathan S Weissman; Eric S Lander
Journal:  Cell       Date:  2013-06-27       Impact factor: 41.582

4.  Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling.

Authors:  Nicholas T Ingolia; Sina Ghaemmaghami; John R S Newman; Jonathan S Weissman
Journal:  Science       Date:  2009-02-12       Impact factor: 47.728

5.  Molecular architecture of a eukaryotic translational initiation complex.

Authors:  Israel S Fernández; Xiao-Chen Bai; Tanweer Hussain; Ann C Kelley; Jon R Lorsch; V Ramakrishnan; Sjors H W Scheres
Journal:  Science       Date:  2013-11-07       Impact factor: 47.728

6.  Ribosome profiling reveals pervasive translation outside of annotated protein-coding genes.

Authors:  Nicholas T Ingolia; Gloria A Brar; Noam Stern-Ginossar; Michael S Harris; Gaëlle J S Talhouarne; Sarah E Jackson; Mark R Wills; Jonathan S Weissman
Journal:  Cell Rep       Date:  2014-08-21       Impact factor: 9.423

7.  Genome-wide search for novel human uORFs and N-terminal protein extensions using ribosomal footprinting.

Authors:  Claudia Fritsch; Alexander Herrmann; Michael Nothnagel; Karol Szafranski; Klaus Huse; Frank Schumann; Stefan Schreiber; Matthias Platzer; Michael Krawczak; Jochen Hampe; Mario Brosch
Journal:  Genome Res       Date:  2012-08-09       Impact factor: 9.043

8.  Translation of 5' leaders is pervasive in genes resistant to eIF2 repression.

Authors:  Dmitry E Andreev; Patrick B F O'Connor; Ciara Fahey; Elaine M Kenny; Ilya M Terenin; Sergey E Dmitriev; Paul Cormican; Derek W Morris; Ivan N Shatsky; Pavel V Baranov
Journal:  Elife       Date:  2015-01-26       Impact factor: 8.140

9.  Computational approach for calculating the probability of eukaryotic translation initiation from ribo-seq data that takes into account leaky scanning.

Authors:  Audrey M Michel; Dmitry E Andreev; Pavel V Baranov
Journal:  BMC Bioinformatics       Date:  2014-11-21       Impact factor: 3.169

10.  Quantitative profiling of initiating ribosomes in vivo.

Authors:  Xiangwei Gao; Ji Wan; Botao Liu; Ming Ma; Ben Shen; Shu-Bing Qian
Journal:  Nat Methods       Date:  2014-12-08       Impact factor: 28.547
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  2 in total

1.  Bayesian prediction of RNA translation from ribosome profiling.

Authors:  Brandon Malone; Ilian Atanassov; Florian Aeschimann; Xinping Li; Helge Großhans; Christoph Dieterich
Journal:  Nucleic Acids Res       Date:  2017-04-07       Impact factor: 16.971

2.  GWIPS-viz: 2018 update.

Authors:  Audrey M Michel; Stephen J Kiniry; Patrick B F O'Connor; James P Mullan; Pavel V Baranov
Journal:  Nucleic Acids Res       Date:  2018-01-04       Impact factor: 16.971
  2 in total

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