Literature DB >> 27479747

Investigating long noncoding RNAs using animal models.

Michael Feyder, Loyal A Goff.   

Abstract

The number of long noncoding RNAs (lncRNAs) has grown rapidly; however, our understanding of their function remains limited. Although cultured cells have facilitated investigations of lncRNA function at the molecular level, the use of animal models provides a rich context in which to investigate the phenotypic impact of these molecules. Promising initial studies using animal models demonstrated that lncRNAs influence a diverse number of phenotypes, ranging from subtle dysmorphia to viability. Here, we highlight the diversity of animal models and their unique advantages, discuss the use of animal models to profile lncRNA expression, evaluate experimental strategies to manipulate lncRNA function in vivo, and review the phenotypes attributable to lncRNAs. Despite a limited number of studies leveraging animal models, lncRNAs are already recognized as a notable class of molecules with important implications for health and disease.

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Year:  2016        PMID: 27479747      PMCID: PMC4966299          DOI: 10.1172/JCI84422

Source DB:  PubMed          Journal:  J Clin Invest        ISSN: 0021-9738            Impact factor:   14.808


  127 in total

1.  Identification of a novel non-coding RNA, MIAT, that confers risk of myocardial infarction.

Authors:  Nobuaki Ishii; Kouichi Ozaki; Hiroshi Sato; Hiroya Mizuno; Atsushi Takahashi; Yoshinari Miyamoto; Shiro Ikegawa; Naoyuki Kamatani; Masatsugu Hori; Yusuke Nakamura; Toshihiro Tanaka
Journal:  J Hum Genet       Date:  2006-10-26       Impact factor: 3.172

Review 2.  Animal models of neuropsychiatric disorders.

Authors:  Eric J Nestler; Steven E Hyman
Journal:  Nat Neurosci       Date:  2010-09-27       Impact factor: 24.884

3.  Potential etiologic and functional implications of genome-wide association loci for human diseases and traits.

Authors:  Lucia A Hindorff; Praveen Sethupathy; Heather A Junkins; Erin M Ramos; Jayashri P Mehta; Francis S Collins; Teri A Manolio
Journal:  Proc Natl Acad Sci U S A       Date:  2009-05-27       Impact factor: 11.205

Review 4.  Long noncoding RNAs: Lessons from genomic imprinting.

Authors:  Chandrasekhar Kanduri
Journal:  Biochim Biophys Acta       Date:  2015-05-22

5.  HELLP babies link a novel lincRNA to the trophoblast cell cycle.

Authors:  Marie van Dijk; Hari K Thulluru; Joyce Mulders; Omar J Michel; Ankie Poutsma; Sandra Windhorst; Gunilla Kleiverda; Daoud Sie; Augusta M A Lachmeijer; Cees B M Oudejans
Journal:  J Clin Invest       Date:  2012-10-24       Impact factor: 14.808

6.  MUNC, a long noncoding RNA that facilitates the function of MyoD in skeletal myogenesis.

Authors:  Adam C Mueller; Magdalena A Cichewicz; Bijan K Dey; Ryan Layer; Brian J Reon; Jeffrey R Gagan; Anindya Dutta
Journal:  Mol Cell Biol       Date:  2014-11-17       Impact factor: 4.272

Review 7.  Guided by RNAs: X-inactivation as a model for lncRNA function.

Authors:  John E Froberg; Lin Yang; Jeannie T Lee
Journal:  J Mol Biol       Date:  2013-06-28       Impact factor: 5.469

8.  The tissue-specific lncRNA Fendrr is an essential regulator of heart and body wall development in the mouse.

Authors:  Phillip Grote; Lars Wittler; David Hendrix; Frederic Koch; Sandra Währisch; Arica Beisaw; Karol Macura; Gaby Bläss; Manolis Kellis; Martin Werber; Bernhard G Herrmann
Journal:  Dev Cell       Date:  2013-01-28       Impact factor: 12.270

9.  DeCoN: genome-wide analysis of in vivo transcriptional dynamics during pyramidal neuron fate selection in neocortex.

Authors:  Bradley J Molyneaux; Loyal A Goff; Andrea C Brettler; Hsu-Hsin Chen; Siniša Hrvatin; John L Rinn; Paola Arlotta
Journal:  Neuron       Date:  2014-12-31       Impact factor: 17.173

10.  Integrative genomic analyses reveal clinically relevant long noncoding RNAs in human cancer.

Authors:  Zhou Du; Teng Fei; Roel G W Verhaak; Zhen Su; Yong Zhang; Myles Brown; Yiwen Chen; X Shirley Liu
Journal:  Nat Struct Mol Biol       Date:  2013-06-02       Impact factor: 15.369

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  12 in total

1.  Host-Directed Targeting of LincRNA-MIR99AHG Suppresses Intracellular Growth of Mycobacterium tuberculosis.

Authors:  Lorna Gcanga; Ousman Tamgue; Mumin Ozturk; Shandre Pillay; Raygaana Jacobs; Julius Ebua Chia; Stanley Kimbung Mbandi; Malika Davids; Keertan Dheda; Sebastian Schmeier; Tanvir Alam; Sugata Roy; Harukazu Suzuki; Frank Brombacher; Reto Guler
Journal:  Nucleic Acid Ther       Date:  2022-07-27       Impact factor: 4.244

Review 2.  LncRNAs in adaptive immunity: role in physiological and pathological conditions.

Authors:  Pedro Faria Zeni; Marek Mraz
Journal:  RNA Biol       Date:  2020-11-09       Impact factor: 4.652

3.  Magnetic Field-Activated Sensing of mRNA in Living Cells.

Authors:  Saira F Bakshi; Nataliia Guz; Andrey Zakharchenko; Han Deng; Alexei V Tumanov; Craig D Woodworth; Sergiy Minko; Dmitry M Kolpashchikov; Evgeny Katz
Journal:  J Am Chem Soc       Date:  2017-08-25       Impact factor: 15.419

4.  The NANCI-Nkx2.1 gene duplex buffers Nkx2.1 expression to maintain lung development and homeostasis.

Authors:  Michael J Herriges; David J Tischfield; Zheng Cui; Michael P Morley; Yumiao Han; Apoorva Babu; Su Li; MinMin Lu; Isis Cendan; Benjamin A Garcia; Stewart A Anderson; Edward E Morrisey
Journal:  Genes Dev       Date:  2017-05-25       Impact factor: 11.361

5.  Regulation of CHD2 expression by the Chaserr long noncoding RNA gene is essential for viability.

Authors:  Aviv Rom; Liliya Melamed; Noa Gil; Micah Jonathan Goldrich; Rotem Kadir; Matan Golan; Inbal Biton; Rotem Ben-Tov Perry; Igor Ulitsky
Journal:  Nat Commun       Date:  2019-11-08       Impact factor: 14.919

6.  The Firre locus produces a trans-acting RNA molecule that functions in hematopoiesis.

Authors:  Jordan P Lewandowski; James C Lee; Taeyoung Hwang; Hongjae Sunwoo; Jill M Goldstein; Abigail F Groff; Nydia P Chang; William Mallard; Adam Williams; Jorge Henao-Meija; Richard A Flavell; Jeannie T Lee; Chiara Gerhardinger; Amy J Wagers; John L Rinn
Journal:  Nat Commun       Date:  2019-11-13       Impact factor: 14.919

7.  The lncRNA Caren antagonizes heart failure by inactivating DNA damage response and activating mitochondrial biogenesis.

Authors:  Michio Sato; Tsuyoshi Kadomatsu; Keishi Miyata; Junco S Warren; Zhe Tian; Shunshun Zhu; Haruki Horiguchi; Aman Makaju; Anna Bakhtina; Jun Morinaga; Taichi Sugizaki; Kaname Hirashima; Kumiko Yoshinobu; Mai Imasaka; Masatake Araki; Yoshihiro Komohara; Tomohiko Wakayama; Shinichi Nakagawa; Sarah Franklin; Koichi Node; Kimi Araki; Yuichi Oike
Journal:  Nat Commun       Date:  2021-05-05       Impact factor: 14.919

Review 8.  Insights into the Functions of LncRNAs in Drosophila.

Authors:  Keqin Li; Yuanliangzi Tian; Ya Yuan; Xiaolan Fan; Mingyao Yang; Zhi He; Deying Yang
Journal:  Int J Mol Sci       Date:  2019-09-19       Impact factor: 5.923

Review 9.  The role of long noncoding RNAs in hepatocellular carcinoma.

Authors:  Zhao Huang; Jian-Kang Zhou; Yong Peng; Weifeng He; Canhua Huang
Journal:  Mol Cancer       Date:  2020-04-15       Impact factor: 27.401

10.  Long noncoding RNA SAM promotes myoblast proliferation through stabilizing Sugt1 and facilitating kinetochore assembly.

Authors:  Yuying Li; Jie Yuan; Fengyuan Chen; Suyang Zhang; Yu Zhao; Xiaona Chen; Leina Lu; Liang Zhou; Ching Yan Chu; Hao Sun; Huating Wang
Journal:  Nat Commun       Date:  2020-06-01       Impact factor: 14.919

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