| Literature DB >> 27468266 |
Young-Eun Cho1, Lawrence L Latour2, Hyungsuk Kim1, L Christine Turtzo2, Anlys Olivera1, Whitney S Livingston1, Dan Wang1, Christiana Martin1, Chen Lai1, Ann Cashion1, Jessica Gill1.
Abstract
Older age consistently relates to a lesser ability to fully recover from a traumatic brain injury (TBI); however, there is limited data to explicate the nature of age-related risks. This study was undertaken to determine the relationship of age on gene-activity following a TBI, and how this biomarker relates to changes in neuroimaging findings. A young group (between the ages of 19 and 35 years), and an old group (between the ages of 60 and 89 years) were compared on global gene-activity within 48 h following a TBI, and then at follow-up within 1-week. At each time-point, gene expression profiles, and imaging findings from both magnetic resonance imaging (MRI) and computed tomography were obtained and compared. The young group was found to have greater gene expression of inflammatory regulatory genes at 48 h and 1-week in genes such as basic leucine zipper transcription factor 2 (BACH2), leucine-rich repeat neuronal 3 (LRRN3), and lymphoid enhancer-binding factor 1 (LEF1) compared to the old group. In the old group, there was increased activity in genes within S100 family, including calcium binding protein P (S100P) and S100 calcium binding protein A8 (S100A8), which previous studies have linked to poor recovery from TBI. The old group also had reduced activity of the noggin (NOG) gene, which is a member of the transforming growth factor-β superfamily and is linked to neurorecovery and neuroregeneration compared to the young group. We link these gene expression findings that were validated to neuroimaging, reporting that in the old group with a MRI finding of TBI-related damage, there was a lesser likelihood to then have a negative MRI finding at follow-up compared to the young group. Together, these data indicate that age impacts gene activity following a TBI, and suggest that this differential activity related to immune regulation and neurorecovery contributes to a lesser likelihood of neuronal recovery in older patients as indicated through neuroimaging.Entities:
Keywords: aging; gene expression; imaging; inflammation; traumatic brain injury
Year: 2016 PMID: 27468266 PMCID: PMC4942460 DOI: 10.3389/fnagi.2016.00168
Source DB: PubMed Journal: Front Aging Neurosci ISSN: 1663-4365 Impact factor: 5.750
Demographic and clinical characteristics of the young and the old groups at 48 h and 1-week post-injury.
| Variable | Young group | Old group | |
|---|---|---|---|
| No. | 33 | 33 | |
| Male, | 26 (78.8) | 20 (60.6) | 0.180 |
| Age, median (IQR) | 27.6 (23–32) | 67.5 (64–80) | <0.001 |
| Race, | |||
| Caucasian | 28 (84.8) | 31 (93.9) | 0.230 |
| Latino/Hispanic | 11 (33.33) | 2 (6.06) | 0.005 |
| Post-traumatic amnesia, | 25 (75.8) | 15 (45.5) | 0.012 |
| Post-traumatic amnesia duration, | |||
| 1 s to 10 min | 10 (40.00) | 4 (26.67) | 0.247 |
| 10 min to 30 min | 4 (16.00) | 5 (33.33) | |
| 30 min to 1 h | 5 (20.00) | 0 (0.00) | |
| 1 h to 12 h | 3 (12.00%) | 2 (13.33) | |
| 12 h to 24 h | 1 (4.00) | 0 (0.00) | |
| Unknown | 1 (4.00) | 3 (20.00) | |
| Loss of consciousness, | 27 (81.8) | 14 (42.4) | 0.006 |
| Loss of consciousness duration, | |||
| <1 min | 4 (14.81) | 1 (5.26) | 0.155 |
| 1 min to 29 min | 16 (59.26) | 8 (42.11) | |
| 30 min to 59 min | 0 (0.00) | 0 (0.00) | |
| 1 h to 24 h | 1 (3.70) | 0 (0.00) | |
| Unknown | 6 (22.22) | 10 (52.63) | |
| GCS 48 h while admitted <15, | 7 (21.2) | 10 (30.3) | 0.677 |
| NSI total 48 h, median (IQR) | 15.0 (11–26) | 10.0 (4–28) | 0.004 |
| NSI total 1 week, median (IQR) | 9.0 (4–19) | 8.0 (1–14) | 0.136 |
| Injury mechanism, | |||
| Acceleration/deceleration | 5 (15.15) | 1 (3.03) | 0.551 |
| Direct impact (blow to head) | 7 (21.21) | 9 (27.27) | |
| Direct impact (head against object) | 8 (24.24) | 9 (27.27) | |
| Fall (ground floor) | 7 (21.21) | 8 (24.24) | |
| Fall (height > 1 m) | 6 (21.21) | 6 (18.18) | |
CT and MRI data at 48 h and 1-week post-injury for both groups.
| 48 h ( | 1 week ( | |||||
|---|---|---|---|---|---|---|
| Young group ( | Old group ( | Young group ( | Old group ( | |||
| CT | ||||||
| TBI (+) | 3/32 (9.38%) | 18/33 (54.55%) | <0.001 | |||
| Intracerebral hemorrhage | 1/32 (3.13%) | 4/33 (12.12%) | 0.174 | |||
| MRI | ||||||
| TBI (+) | 24/33 (72.72%)# | 25/33 (75.76%) | 0.778 | 8/25 (32.00%)# | 16/21 (76.19%) | 0.003 |
| TBI (+) only at 48 h (=resolve) | 13/24 (54.17%) | 2/21 (9.52%) | 0.002 | |||
| TBI no change in 1-week | 8/24 (33.33%) | 15/21 (71.43%) | 0.017 | |||
| TBI (+) only at 1-week | 3/24 (12.5%) | 4/21 (19.05%) | 0.545 | |||
Upregulated genes in the young compared to the old group at 48 h post-injury and its change at 1-week post-injury.
| Symbol | Gene name | False discovery rate ( | Fold change at 48 h | False discovery rate ( | Fold change at 1-week |
|---|---|---|---|---|---|
| LRRN3 | Leucine-rich repeat neuronal 3 | 0.008 | 2.849∗ | 0.005 | 3.692∗ |
| IGHA1 | Immunoglobulin heavy constant alpha 1 | 0.023 | 2.039∗ | 0.123 | 2.600∗ |
| IGJ | Immunoglobulin J polypeptide, linker protein for immunoglobulin alpha and mu polypeptides | 0.030 | 1.941∗ | 0.195 | 2.331∗ |
| POU2AF1 | POU class 2 associating factor 1 | 0.010 | 1.879∗ | 0.027 | 1.965∗ |
| NOG | Noggin | 0.010 | 1.852∗ | 0.005 | 2.234∗ |
| IGLC1 | Immunoglobulin lambda constant 1 (Mcg marker) | 0.027 | 1.784∗ | 0.043 | 2.220∗ |
| EBF1 | Early B cell factor 1 | 0.015 | 1.767∗ | 0.141 | 1.592∗ |
| PAX5 | Paired box 5 | 0.019 | 1.763∗ | 0.098 | 1.770∗ |
| NT5E | 5′-nucleotidase, ecto (CD73) | 0.012 | 1.736∗ | 0.021 | 1.656∗ |
| IGHG1 | Immunoglobulin heavy constant gamma 1 (G1m marker) | 0.032 | 1.731∗ | 0.163 | 2.407∗ |
| AFF3 | AF4/FMR2 family, member 3 | 0.031 | 1.689∗ | 0.192 | 1.630∗ |
| SF1 | Splicing factor 1 | 0.016 | 1.667∗ | 0.363 | 1.532∗ |
| TNFRSF17 | Tumor necrosis factor (TNF) receptor superfamily, member 17 | 0.029 | 1.664∗ | 0.448 | 1.465 |
| HIP1 | Huntingtin interacting protein 1 | 0.030 | 1.656∗ | 0.552 | 1.378 |
| ZBTB20 | Zinc finger and BTB domain containing 20 | 0.008 | 1.619∗ | 0.122 | 1.523∗ |
| IGHD | Immunoglobulin heavy constant delta | 0.029 | 1.619∗ | 0.379 | 1.408 |
| BACH2 | BTB and CNC homology 1, basic leucine zipper transcription factor 2 | 0.028 | 1.616∗ | 0.019 | 1.849∗ |
| BLNK | B cell linker | 0.029 | 1.615∗ | 0.145 | 1.609∗ |
| CAMK4 | Calcium/calmodulin-dependent protein kinase IV | 0.031 | 1.615∗ | 0.179 | 1.696∗ |
| STRBP | Spermatid perinuclear RNA binding protein | 0.010 | 1.598∗ | 0.021 | 1.584∗ |
| IGKC | Immunoglobulin kappa constant | 0.008 | 1.597∗ | 0.161 | 1.325 |
| FCRL5 | Fc receptor-like 5 | 0.032 | 1.589∗ | 0.514 | 1.333 |
| SLC16A10 | Solute carrier family 16 (aromatic amino acid transporter), member 10 | 0.012 | 1.581∗ | 0.076 | 1.479 |
| PITPNC1 | Phosphatidylinositol transfer protein, cytoplasmic 1 | 0.006 | 1.575∗ | 0.179 | 1.611∗ |
| TSPAN13 | Tetraspanin 13 | 0.027 | 1.575∗ | 0.146 | 1.541∗ |
| KLHL24 | Kelch-like family member 24 | 0.021 | 1.569∗ | 0.515 | 1.268 |
| ETS1 | v-ets avian erythroblastosis virus E26 oncogene homolog 1 | 0.021 | 1.565∗ | 0.296 | 1.359 |
| AUTS2 | Autism susceptibility candidate 2 | 0.010 | 1.564∗ | 0.057 | 1.726∗ |
| CDCA7L | Cell division cycle associated 7-like | 0.004 | 1.561∗ | 0.005 | 1.505∗ |
| OSBPL10 | Oxysterol binding protein-like 10 | 0.025 | 1.557∗ | 0.119 | 1.545∗ |
| ABLIM1 | Actin binding LIM protein 1 | 0.019 | 1.556∗ | 0.024 | 1.725∗ |
| IQGAP1 | IQ motif containing GTPase activating protein 1 | 0.030 | 1.543∗ | 0.697 | 1.281 |
| P2RY10 | Purinergic receptor P2Y, G-protein coupled, 10 | 0.032 | 1.541∗ | 0.077 | 1.617∗ |
| LEF1 | Lymphoid enhancer-binding factor 1 | 0.037 | 1.539∗ | 0.046 | 1.896∗ |
| ERAP1 | Endoplasmic reticulum aminopeptidase 1 | 0.017 | 1.531∗ | 0.383 | 1.455 |
| HSP90AB1 | Heat shock protein 90 kDa alpha (cytosolic), class B member 1 | 0.025 | 1.525∗ | 0.321 | 1.554∗ |
| AGMAT | Agmatineureohydrolase (agmatinase) | 0.029 | 1.519∗ | 0.018 | 1.724∗ |
| MS4A1 | Membrane-spanning 4-domains, subfamily A, member 1 | 0.037 | 1.517∗ | 0.193 | 1.645∗ |
| WLS | wntless Wnt ligand secretion mediator | 0.031 | 1.514∗ | 0.590 | 1.373 |
| TPD52 | Tumor protein D52 | 0.032 | 1.510∗ | 0.266 | 1.392 |
| TCL1A | T cell leukemia/lymphoma 1A | 0.041 | 1.507∗ | 0.411 | 1.476 |
| IGHM | Immunoglobulin heavy constant mu | 0.019 | 1.503∗ | 0.064 | 1.548∗ |
| SGK223 | Homolog of rat pragma of Rnd2 | 0.028 | 1.419 | 0.005 | 1.671∗ |
| FAIM3 | Fas apoptotic inhibitory molecule 3 | 0.040 | 1.363 | 0.021 | 1.665∗ |
| AQP3 | Aquaporin 3 (gill blood group) | 0.045 | 1.470 | 0.034 | 1.658∗ |
| TRAF5 | TNF receptor-associated factor 5 | 0.049 | 1.416 | 0.043 | 1.642∗ |
| PLXDC1 | Plexin domain containing 1 | 0.029 | 1.327 | 0.001 | 1.595∗ |
| MAN1C1 | Mannosidase, alpha, class 1C, member 1 | 0.054 | 1.322 | 0.033 | 1.561∗ |
| SCML1 | Sex comb on midleg-like 1 (Drosophila) | 0.019 | 1.460 | 0.020 | 1.527∗ |
| ZNF827 | Zinc finger protein 827 | 0.052 | 1.322 | 0.031 | 1.513∗ |
| TCF4 | Transcription factor 4 | 0.029 | 1.415 | 0.043 | 1.502∗ |
Functional classification of significantly upregulated genes in young group at 48 h post-injury.
| Functions | Genes |
|---|---|
| Cell-to-cell signaling and interaction, cellular development, cellular growth and proliferation (score = 27) | BACH2, CAMK4, CDCA7L, ERAP1, HIP1, IGHM, IQGAP1, KLHL24, LEF1, MS4A1, NT5E, PAX5, SF1 |
| Cancer, cell death and survival, organismal injury and abnormalities (score = 20) | AFF3, BLNK, ETS1, FCRL5, HSP90AB1, PITPNC1, SLC16A10, TCL1A, TNFRSF17, TPD52, ZBTB20 |
| Cellular development, cellular growth and proliferation, hematological system development and function (score = 15) | ABLIM1, AGMAT, AUTS2, IGHG1, IGLC1, LRRN3, NOG, POU2AF1, TSPAN13 |
| Developmental disorder, hematological disease, hereditary disorder (score = 2) | P2RY10 |
| Cell-to-cell signaling and interaction, cellular compromise, cellular function and maintenance (score = 2) | IGHA1 |
Genes associated with neurological and inflammatory disorders in young group at 48h post-injury.
| Diseases | Genes | |
|---|---|---|
| Neurological diseases | 2.48E-02–1.20E-05 | ABLIM1, AUTS2, ERAP1, PITPNC1, TSPAN13, CDCA7L, IGHG1, IGHM, PITPNC1, MS4A1 |
| Inflammatory response | 3.66E-02–3.25E-05 | BLNK, PAX5, POU2AF1, IGHA1, IGHM, MS41, IGHG1, NT5E, TCL1A, IGHM, MS4A1 |
Upregulated genes in the old compared to the young group at 48 h post-injury and its change at 1-week post-injury.
| Symbol | Gene name | False discovery rate ( | Fold change at 48 h | False discovery rate ( | Fold change at 1-week |
|---|---|---|---|---|---|
| S100P | S100 calcium binding protein P | 0.0354 | 1.954 | 0.575 | 1.361 |
| CA1 | Carbonic anhydrase I | 0.0235 | 1.905 | 0.361 | 1.630 |
| ITGB2 | Integrin, beta 2 (complement component 3 receptor 3 and 4 subunit) | 0.0344 | 1.898 | 0.583 | 1.480 |
| RNASE2 | Ribonuclease, RNase A family, 2 (liver, eosinophil-derived neurotoxin) | 0.0339 | 1.549 | 0.276 | 2.251 |
| S100A8 | S100 calcium binding protein A8 | 0.0212 | 1.515 | 0.230 | 2.469 |