Literature DB >> 27468111

Structure-guided wavelength tuning in far-red fluorescent proteins.

Ho-Leung Ng1, Michael Z Lin2.   

Abstract

In recent years, protein engineers have succeeded in tuning the excitation spectra of natural fluorescent proteins from green wavelengths into orange and red wavelengths, resulting in the creation of a series of fluorescent proteins with emission in the far-red portions of the optical spectrum. These results have arisen from the synergistic combination of structural knowledge of fluorescent proteins, chemical intuition, and high-throughput screening methods. Here we review structural features found in autocatalytic far-red fluorescent proteins, and discuss how they add to our understanding of the biophysical mechanisms of wavelength tuning in biological chromophores.
Copyright © 2016. Published by Elsevier Ltd.

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Year:  2016        PMID: 27468111      PMCID: PMC5548387          DOI: 10.1016/j.sbi.2016.07.010

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  58 in total

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Journal:  Proc Natl Acad Sci U S A       Date:  2004-11-19       Impact factor: 11.205

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Authors:  Dmitry Shcherbo; Ekaterina M Merzlyak; Tatiana V Chepurnykh; Arkady F Fradkov; Galina V Ermakova; Elena A Solovieva; Konstantin A Lukyanov; Ekaterina A Bogdanova; Andrey G Zaraisky; Sergey Lukyanov; Dmitriy M Chudakov
Journal:  Nat Methods       Date:  2007-08-26       Impact factor: 28.547

3.  An evaluation of genetically encoded FRET-based biosensors for quantitative metabolite analyses in vivo.

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4.  Insight into the common mechanism of the chromophore formation in the red fluorescent proteins: the elusive blue intermediate revealed.

Authors:  Ksenia B Bravaya; Oksana M Subach; Nadezhda Korovina; Vladislav V Verkhusha; Anna I Krylov
Journal:  J Am Chem Soc       Date:  2012-01-26       Impact factor: 15.419

5.  A photoswitchable orange-to-far-red fluorescent protein, PSmOrange.

Authors:  Oksana M Subach; George H Patterson; Li-Min Ting; Yarong Wang; John S Condeelis; Vladislav V Verkhusha
Journal:  Nat Methods       Date:  2011-07-31       Impact factor: 28.547

6.  High-fidelity optical reporting of neuronal electrical activity with an ultrafast fluorescent voltage sensor.

Authors:  François St-Pierre; Jesse D Marshall; Ying Yang; Yiyang Gong; Mark J Schnitzer; Michael Z Lin
Journal:  Nat Neurosci       Date:  2014-04-22       Impact factor: 24.884

7.  Non-Invasive In Vivo Imaging and Quantification of Tumor Growth and Metastasis in Rats Using Cells Expressing Far-Red Fluorescence Protein.

Authors:  Jon Christensen; Daniel Vonwil; V Prasad Shastri
Journal:  PLoS One       Date:  2015-07-17       Impact factor: 3.240

8.  Extended Stokes shift in fluorescent proteins: chromophore-protein interactions in a near-infrared TagRFP675 variant.

Authors:  Kiryl D Piatkevich; Vladimir N Malashkevich; Kateryna S Morozova; Nicolai A Nemkovich; Steven C Almo; Vladislav V Verkhusha
Journal:  Sci Rep       Date:  2013       Impact factor: 4.379

9.  Improving FRET dynamic range with bright green and red fluorescent proteins.

Authors:  Amy J Lam; François St-Pierre; Yiyang Gong; Jesse D Marshall; Paula J Cranfill; Michelle A Baird; Michael R McKeown; Jörg Wiedenmann; Michael W Davidson; Mark J Schnitzer; Roger Y Tsien; Michael Z Lin
Journal:  Nat Methods       Date:  2012-09-09       Impact factor: 28.547

10.  An optimized triple modality reporter for quantitative in vivo tumor imaging and therapy evaluation.

Authors:  Rachel A Levin; Csilla N Felsen; Jin Yang; John Y Lin; Michael A Whitney; Quyen T Nguyen; Roger Y Tsien
Journal:  PLoS One       Date:  2014-05-09       Impact factor: 3.240

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  4 in total

1.  Fluorescent indicators for simultaneous reporting of all four cell cycle phases.

Authors:  Bryce T Bajar; Amy J Lam; Ryan K Badiee; Young-Hee Oh; Jun Chu; Xin X Zhou; Namdoo Kim; Benjamin B Kim; Mingyu Chung; Arielle L Yablonovitch; Barney F Cruz; Kanokwan Kulalert; Jacqueline J Tao; Tobias Meyer; Xiao-Dong Su; Michael Z Lin
Journal:  Nat Methods       Date:  2016-10-31       Impact factor: 28.547

2.  Recent Advances in Gene Therapy for Cancer Theranostics.

Authors:  Hannah J Vaughan; Jordan J Green
Journal:  Curr Opin Biomed Eng       Date:  2021-07-15

3.  A Bright, Nontoxic, and Non-aggregating red Fluorescent Protein for Long-Term Labeling of Fine Structures in Neurons.

Authors:  Lin Ning; Yang Geng; Matthew Lovett-Barron; Xiaoman Niu; Mengying Deng; Liang Wang; Niloufar Ataie; Alex Sens; Ho-Leung Ng; Shoudeng Chen; Karl Deisseroth; Michael Z Lin; Jun Chu
Journal:  Front Cell Dev Biol       Date:  2022-06-29

4.  Tissue clearing may alter emission and absorption properties of common fluorophores.

Authors:  Farsam Eliat; Rebecca Sohn; Henrik Renner; Theresa Kagermeier; Stefan Volkery; Heike Brinkmann; Nils Kirschnick; Friedemann Kiefer; Martha Grabos; Katharina Becker; Ivan Bedzhov; Hans R Schöler; Jan M Bruder
Journal:  Sci Rep       Date:  2022-04-01       Impact factor: 4.996

  4 in total

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