Literature DB >> 27466773

CADASTER QSPR Models for Predictions of Melting and Boiling Points of Perfluorinated Chemicals.

Barun Bhhatarai1, Wolfram Teetz2, Tao Liu3, Tomas Öberg3, Nina Jeliazkova4, Nikolay Kochev5, Ognyan Pukalov5, Igor V Tetko2, Simona Kovarich6, Ester Papa6, Paola Gramatica6.   

Abstract

Quantitative structure property relationship (QSPR) studies on per- and polyfluorinated chemicals (PFCs) on melting point (MP) and boiling point (BP) are presented. The training and prediction chemicals used for developing and validating the models were selected from Syracuse PhysProp database and literatures. The available experimental data sets were split in two different ways: a) random selection on response value, and b) structural similarity verified by self-organizing-map (SOM), in order to propose reliable predictive models, developed only on the training sets and externally verified on the prediction sets. Individual linear and non-linear approaches based models developed by different CADASTER partners on 0D-2D Dragon descriptors, E-state descriptors and fragment based descriptors as well as consensus model and their predictions are presented. In addition, the predictive performance of the developed models was verified on a blind external validation set (EV-set) prepared using PERFORCE database on 15 MP and 25 BP data respectively. This database contains only long chain perfluoro-alkylated chemicals, particularly monitored by regulatory agencies like US-EPA and EU-REACH. QSPR models with internal and external validation on two different external prediction/validation sets and study of applicability-domain highlighting the robustness and high accuracy of the models are discussed. Finally, MPs for additional 303 PFCs and BPs for 271 PFCs were predicted for which experimental measurements are unknown.
Copyright © 2011 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Keywords:  Multiple linear regression (MLR); Neural network (NN); Partial least squares regression (PLSR); Perfluorinated chemicals (PFCs); Quantitative structure property relationship (QSPR)

Year:  2011        PMID: 27466773     DOI: 10.1002/minf.201000133

Source DB:  PubMed          Journal:  Mol Inform        ISSN: 1868-1743            Impact factor:   3.353


  4 in total

1.  In Silico Prediction of Physicochemical Properties of Environmental Chemicals Using Molecular Fingerprints and Machine Learning.

Authors:  Qingda Zang; Kamel Mansouri; Antony J Williams; Richard S Judson; David G Allen; Warren M Casey; Nicole C Kleinstreuer
Journal:  J Chem Inf Model       Date:  2017-01-09       Impact factor: 4.956

2.  Estimation of melting points of large set of persistent organic pollutants utilizing QSPR approach.

Authors:  Marquita Watkins; Natalia Sizochenko; Bakhtiyor Rasulev; Jerzy Leszczynski
Journal:  J Mol Model       Date:  2016-02-13       Impact factor: 1.810

3.  Modeling Physico-Chemical ADMET Endpoints with Multitask Graph Convolutional Networks.

Authors:  Floriane Montanari; Lara Kuhnke; Antonius Ter Laak; Djork-Arné Clevert
Journal:  Molecules       Date:  2019-12-21       Impact factor: 4.411

4.  QSARINS-Chem standalone version: A new platform-independent software to profile chemicals for physico-chemical properties, fate, and toxicity.

Authors:  Nicola Chirico; Alessandro Sangion; Paola Gramatica; Linda Bertato; Ilaria Casartelli; Ester Papa
Journal:  J Comput Chem       Date:  2021-05-11       Impact factor: 3.376

  4 in total

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