Literature DB >> 27465315

Organometallic Complex Formed by an Unconventional Radical S-Adenosylmethionine Enzyme.

Min Dong1, Masaki Horitani2, Boris Dzikovski1, Maria-Eirini Pandelia3, Carsten Krebs4, Jack H Freed1, Brian M Hoffman2, Hening Lin1,5.   

Abstract

Pyrococcus horikoshii Dph2 (PhDph2) is an unusual radical S-adenosylmethionine (SAM) enzyme involved in the first step of diphthamide biosynthesis. It catalyzes the reaction by cleaving SAM to generate a 3-amino-3-carboxypropyl (ACP) radical. To probe the reaction mechanism, we synthesized a SAM analogue (SAMCA), in which the ACP group of SAM is replaced with a 3-carboxyallyl group. SAMCA is cleaved by PhDph2, yielding a paramagnetic (S = 1/2) species, which is assigned to a complex formed between the reaction product, α-sulfinyl-3-butenoic acid, and the [4Fe-4S] cluster. Electron-nuclear double resonance (ENDOR) measurements with (13)C and (2)H isotopically labeled SAMCA support a π-complex between the CC double bond of α-sulfinyl-3-butenoic acid and the unique iron of the [4Fe-4S] cluster. This is the first example of a radical SAM-related [4Fe-4S](+) cluster forming an organometallic complex with an alkene, shedding additional light on the mechanism of PhDph2 and expanding our current notions for the reactivity of [4Fe-4S] clusters in radical SAM enzymes.

Entities:  

Mesh:

Substances:

Year:  2016        PMID: 27465315      PMCID: PMC5068486          DOI: 10.1021/jacs.6b04155

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  17 in total

1.  Bioorganometallic mechanism of action, and inhibition, of IspH.

Authors:  Weixue Wang; Ke Wang; Yi-Liang Liu; Joo-Hwan No; Jikun Li; Mark J Nilges; Eric Oldfield
Journal:  Proc Natl Acad Sci U S A       Date:  2010-02-19       Impact factor: 11.205

2.  DNA repair and free radicals, new insights into the mechanism of spore photoproduct lyase revealed by single amino acid substitution.

Authors:  Alexia Chandor-Proust; Olivier Berteau; Thierry Douki; Didier Gasparutto; Sandrine Ollagnier-de-Choudens; Marc Fontecave; Mohamed Atta
Journal:  J Biol Chem       Date:  2008-10-27       Impact factor: 5.157

Review 3.  Radical S-adenosylmethionine enzymes.

Authors:  Joan B Broderick; Benjamin R Duffus; Kaitlin S Duschene; Eric M Shepard
Journal:  Chem Rev       Date:  2014-01-29       Impact factor: 60.622

4.  Why Nature Uses Radical SAM Enzymes so Widely: Electron Nuclear Double Resonance Studies of Lysine 2,3-Aminomutase Show the 5'-dAdo• "Free Radical" Is Never Free.

Authors:  Masaki Horitani; Amanda S Byer; Krista A Shisler; Tilak Chandra; Joan B Broderick; Brian M Hoffman
Journal:  J Am Chem Soc       Date:  2015-05-19       Impact factor: 15.419

5.  Are free radicals involved in IspH catalysis? An EPR and crystallographic investigation.

Authors:  Weixue Wang; Ke Wang; Ingrid Span; Johann Jauch; Adelbert Bacher; Michael Groll; Eric Oldfield
Journal:  J Am Chem Soc       Date:  2012-06-28       Impact factor: 15.419

6.  Radical SAM catalysis via an organometallic intermediate with an Fe-[5'-C]-deoxyadenosyl bond.

Authors:  Masaki Horitani; Krista Shisler; William E Broderick; Rachel U Hutcheson; Kaitlin S Duschene; Amy R Marts; Brian M Hoffman; Joan B Broderick
Journal:  Science       Date:  2016-05-12       Impact factor: 47.728

7.  Catalyst-free conjugated addition of thiols to alpha,beta-unsaturated carbonyl compounds in water.

Authors:  Gopal L Khatik; Raj Kumar; Asit K Chakraborti
Journal:  Org Lett       Date:  2006-05-25       Impact factor: 6.005

8.  An organometallic intermediate during alkyne reduction by nitrogenase.

Authors:  Hong-In Lee; Robert Y Igarashi; Mikhail Laryukhin; Peter E Doan; Patricia C Dos Santos; Dennis R Dean; Lance C Seefeldt; Brian M Hoffman
Journal:  J Am Chem Soc       Date:  2004-08-11       Impact factor: 15.419

Review 9.  The biosynthesis and biological function of diphthamide.

Authors:  Xiaoyang Su; Zhewang Lin; Hening Lin
Journal:  Crit Rev Biochem Mol Biol       Date:  2013-08-23       Impact factor: 8.697

10.  Dph3 is an electron donor for Dph1-Dph2 in the first step of eukaryotic diphthamide biosynthesis.

Authors:  Min Dong; Xiaoyang Su; Boris Dzikovski; Emily E Dando; Xuling Zhu; Jintang Du; Jack H Freed; Hening Lin
Journal:  J Am Chem Soc       Date:  2014-01-22       Impact factor: 15.419

View more
  9 in total

1.  Noncanonical Radical SAM Enzyme Chemistry Learned from Diphthamide Biosynthesis.

Authors:  Min Dong; Yugang Zhang; Hening Lin
Journal:  Biochemistry       Date:  2018-05-10       Impact factor: 3.162

2.  The asymmetric function of Dph1-Dph2 heterodimer in diphthamide biosynthesis.

Authors:  Min Dong; Emily E Dando; Ilana Kotliar; Xiaoyang Su; Boris Dzikovski; Jack H Freed; Hening Lin
Journal:  J Biol Inorg Chem       Date:  2019-08-28       Impact factor: 3.358

3.  Methods for Studying the Radical SAM Enzymes in Diphthamide Biosynthesis.

Authors:  Min Dong; Yugang Zhang; Hening Lin
Journal:  Methods Enzymol       Date:  2018       Impact factor: 1.600

4.  Organometallic and radical intermediates reveal mechanism of diphthamide biosynthesis.

Authors:  Min Dong; Venkatesan Kathiresan; Michael K Fenwick; Andrew T Torelli; Yang Zhang; Jonathan D Caranto; Boris Dzikovski; Ajay Sharma; Kyle M Lancaster; Jack H Freed; Steven E Ealick; Brian M Hoffman; Hening Lin
Journal:  Science       Date:  2018-03-16       Impact factor: 47.728

5.  Substrate-Dependent Cleavage Site Selection by Unconventional Radical S-Adenosylmethionine Enzymes in Diphthamide Biosynthesis.

Authors:  Min Dong; Masaki Horitani; Boris Dzikovski; Jack H Freed; Steven E Ealick; Brian M Hoffman; Hening Lin
Journal:  J Am Chem Soc       Date:  2017-04-13       Impact factor: 15.419

6.  The B12-independent glycerol dehydratase activating enzyme from Clostridium butyricum cleaves SAM to produce 5'-deoxyadenosine and not 5'-deoxy-5'-(methylthio)adenosine.

Authors:  William G Walls; James D Moody; Elizabeth C McDaniel; Maria Villanueva; Eric M Shepard; William E Broderick; Joan B Broderick
Journal:  J Inorg Biochem       Date:  2021-11-12       Impact factor: 4.155

Review 7.  C-C bond forming radical SAM enzymes involved in the construction of carbon skeletons of cofactors and natural products.

Authors:  Kenichi Yokoyama; Edward A Lilla
Journal:  Nat Prod Rep       Date:  2018-07-18       Impact factor: 13.423

8.  Mechanistic Studies of Radical SAM Enzymes: Pyruvate Formate-Lyase Activating Enzyme and Lysine 2,3-Aminomutase Case Studies.

Authors:  Amanda S Byer; Elizabeth C McDaniel; Stella Impano; William E Broderick; Joan B Broderick
Journal:  Methods Enzymol       Date:  2018-07-07       Impact factor: 1.600

9.  Analysis of Electrochemical Properties of S-Adenosyl-l-methionine and Implications for Its Role in Radical SAM Enzymes.

Authors:  Sven A Miller; Vahe Bandarian
Journal:  J Am Chem Soc       Date:  2019-07-08       Impact factor: 15.419

  9 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.