Literature DB >> 27423867

Current Proteomic Methods to Investigate the Dynamics of Histone Turnover in the Central Nervous System.

L A Farrelly1, B D Dill2, H Molina2, M R Birtwistle1, I Maze3.   

Abstract

Characterizing the dynamic behavior of nucleosomes in the central nervous system is vital to our understanding of brain-specific chromatin-templated processes and their roles in transcriptional plasticity. Histone turnover-the complete loss of old, and replacement by new, nucleosomal histones-is one such phenomenon that has recently been shown to be critical for cell-type-specific transcription in brain, synaptic plasticity, and cognition. Such revelations that histones, long believed to static proteins in postmitotic cells, are highly dynamic in neurons were only possible owing to significant advances in analytical chemistry-based techniques, which now provide a platform for investigations of histone dynamics in both healthy and diseased tissues. Here, we discuss both past and present proteomic methods (eg, mass spectrometry, human "bomb pulse labeling") for investigating histone turnover in brain with the hope that such information may stimulate future investigations of both adaptive and aberrant forms of "neuroepigenetic" plasticity.
© 2016 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Bomb pulse labeling; Chromatin dynamics; H3.3; Histone turnover; Mass spectrometry; Neuroepigenetics; Proteomics; SILAC

Mesh:

Substances:

Year:  2016        PMID: 27423867      PMCID: PMC4969624          DOI: 10.1016/bs.mie.2016.01.013

Source DB:  PubMed          Journal:  Methods Enzymol        ISSN: 0076-6879            Impact factor:   1.600


  47 in total

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Authors:  David Shechter; Holger L Dormann; C David Allis; Sandra B Hake
Journal:  Nat Protoc       Date:  2007       Impact factor: 13.491

2.  Chemical derivatization of histones for facilitated analysis by mass spectrometry.

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Journal:  Nat Protoc       Date:  2007       Impact factor: 13.491

3.  Beta-N-acetylglucosamine (O-GlcNAc) is part of the histone code.

Authors:  Kaoru Sakabe; Zihao Wang; Gerald W Hart
Journal:  Proc Natl Acad Sci U S A       Date:  2010-11-02       Impact factor: 11.205

4.  Crystal structure of the nucleosome core particle at 2.8 A resolution.

Authors:  K Luger; A W Mäder; R K Richmond; D F Sargent; T J Richmond
Journal:  Nature       Date:  1997-09-18       Impact factor: 49.962

5.  Parallel reaction monitoring for high resolution and high mass accuracy quantitative, targeted proteomics.

Authors:  Amelia C Peterson; Jason D Russell; Derek J Bailey; Michael S Westphall; Joshua J Coon
Journal:  Mol Cell Proteomics       Date:  2012-08-03       Impact factor: 5.911

6.  Identification of 67 histone marks and histone lysine crotonylation as a new type of histone modification.

Authors:  Minjia Tan; Hao Luo; Sangkyu Lee; Fulai Jin; Jeong Soo Yang; Emilie Montellier; Thierry Buchou; Zhongyi Cheng; Sophie Rousseaux; Nisha Rajagopal; Zhike Lu; Zhen Ye; Qin Zhu; Joanna Wysocka; Yang Ye; Saadi Khochbin; Bing Ren; Yingming Zhao
Journal:  Cell       Date:  2011-09-16       Impact factor: 41.582

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Authors:  L P Djondjurov; N Y Yancheva; E C Ivanova
Journal:  Biochemistry       Date:  1983-08-16       Impact factor: 3.162

8.  Autoradiographic and histological evidence of postnatal hippocampal neurogenesis in rats.

Authors:  J Altman; G D Das
Journal:  J Comp Neurol       Date:  1965-06       Impact factor: 3.215

9.  Dynamics of hippocampal neurogenesis in adult humans.

Authors:  Kirsty L Spalding; Olaf Bergmann; Kanar Alkass; Samuel Bernard; Mehran Salehpour; Hagen B Huttner; Emil Boström; Isabelle Westerlund; Celine Vial; Bruce A Buchholz; Göran Possnert; Deborah C Mash; Henrik Druid; Jonas Frisén
Journal:  Cell       Date:  2013-06-06       Impact factor: 41.582

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Authors:  Barry M Zee; Rebecca S Levin; Peter A DiMaggio; Benjamin A Garcia
Journal:  Epigenetics Chromatin       Date:  2010-12-06       Impact factor: 4.954

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  2 in total

Review 1.  Mass spectrometry-based characterization of histones in clinical samples: applications, progress, and challenges.

Authors:  Roberta Noberini; Giulia Robusti; Tiziana Bonaldi
Journal:  FEBS J       Date:  2021-01-23       Impact factor: 5.622

2.  Nucleosome stability measured in situ by automated quantitative imaging.

Authors:  László Imre; Zoltán Simándi; Attila Horváth; György Fenyőfalvi; Péter Nánási; Erfaneh Firouzi Niaki; Éva Hegedüs; Zsolt Bacsó; Urbain Weyemi; Rebekka Mauser; Juan Ausio; Albert Jeltsch; William Bonner; László Nagy; Hiroshi Kimura; Gábor Szabó
Journal:  Sci Rep       Date:  2017-10-06       Impact factor: 4.379

  2 in total

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