Literature DB >> 27423541

Outgroups and Positive Selection: The Nothobranchius furzeri Case.

Arne Sahm1, Matthias Platzer1, Alessandro Cellerino2.   

Abstract

Applications of positive selection analysis increase with the number of species for which genome/transcriptome sequences become available. Using the recently sequenced turquoise killifish (Nothobranchius furzeri) genome as an example, we compare two different approaches based on different outgroup selection. The combination of these two methods allows the origin of positively selected sites in aging-related genes of the N. furzeri genome to be determined.
Copyright © 2016 Elsevier Ltd. All rights reserved.

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Year:  2016        PMID： 27423541     DOI： 10.1016/j.tig.2016.06.002

Source DB:  PubMed          Journal:  Trends Genet        ISSN： 0168-9525            Impact factor:   11.639


  7 in total

Review 1.  Molecular signatures of longevity: Insights from cross-species comparative studies.

Authors:  Siming Ma; Vadim N Gladyshev
Journal:  Semin Cell Dev Biol       Date:  2017-08-08       Impact factor: 7.727

2.  PosiGene: automated and easy-to-use pipeline for genome-wide detection of positively selected genes.

Authors:  Arne Sahm; Martin Bens; Matthias Platzer; Karol Szafranski
Journal:  Nucleic Acids Res       Date:  2017-06-20       Impact factor: 16.971

Review 3.  The Genetics of Aging: A Vertebrate Perspective.

Authors:  Param Priya Singh; Brittany A Demmitt; Ravi D Nath; Anne Brunet
Journal:  Cell       Date:  2019-03-21       Impact factor: 41.582

4.  Parallel evolution of genes controlling mitonuclear balance in short-lived annual fishes.

Authors:  Arne Sahm; Martin Bens; Matthias Platzer; Alessandro Cellerino
Journal:  Aging Cell       Date:  2017-03-11       Impact factor: 9.304

5.  Long-lived rodents reveal signatures of positive selection in genes associated with lifespan.

Authors:  Arne Sahm; Martin Bens; Karol Szafranski; Susanne Holtze; Marco Groth; Matthias Görlach; Cornelis Calkhoven; Christine Müller; Matthias Schwab; Johann Kraus; Hans A Kestler; Alessandro Cellerino; Hynek Burda; Thomas Hildebrandt; Philip Dammann; Matthias Platzer
Journal:  PLoS Genet       Date:  2018-03-23       Impact factor: 5.917

Review 6.  The African turquoise killifish: A research organism to study vertebrate aging and diapause.

Authors:  Chi-Kuo Hu; Anne Brunet
Journal:  Aging Cell       Date:  2018-03-24       Impact factor: 9.304

7.  Analysis of the coding sequences of clownfish reveals molecular convergence in the evolution of lifespan.

Authors:  Arne Sahm; Pedro Almaida-Pagán; Martin Bens; Mirko Mutalipassi; Alejandro Lucas-Sánchez; Jorge de Costa Ruiz; Matthias Görlach; Alessandro Cellerino
Journal:  BMC Evol Biol       Date:  2019-04-11       Impact factor: 3.260
  7 in total

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