Literature DB >> 27419667

An insight into the thermodynamic characteristics of human thrombopoietin complexation with TN1 antibody.

Shigeki Arai1, Chie Shibazaki2, Motoyasu Adachi2, Eijiro Honjo2, Taro Tamada2, Yoshitake Maeda3, Tomoyuki Tahara3, Takashi Kato4, Hiroshi Miyazaki5, Michael Blaber6, Ryota Kuroki2.   

Abstract

Human thrombopoietin (hTPO) primarily stimulates megakaryocytopoiesis and platelet production and is neutralized by the mouse TN1 antibody. The thermodynamic characteristics of TN1 antibody-hTPO complexation were analyzed by isothermal titration calorimetry (ITC) using an antigen-binding fragment (Fab) derived from the TN1 antibody (TN1-Fab). To clarify the mechanism by which hTPO is recognized by TN1-Fab the conformation of free TN1-Fab was determined to a resolution of 2.0 Å using X-ray crystallography and compared with the hTPO-bound form of TN1-Fab determined by a previous study. This structural comparison revealed that the conformation of TN1-Fab does not substantially change after hTPO binding and a set of 15 water molecules is released from the antigen-binding site (paratope) of TN1-Fab upon hTPO complexation. Interestingly, the heat capacity change (ΔCp) measured by ITC (-1.52 ± 0.05 kJ mol(-1)  K(-1) ) differed significantly from calculations based upon the X-ray structure data of the hTPO-bound and unbound forms of TN1-Fab (-1.02 ∼ 0.25 kJ mol(-1)  K(-1) ) suggesting that hTPO undergoes an induced-fit conformational change combined with significant desolvation upon TN1-Fab binding. The results shed light on the structural biology associated with neutralizing antibody recognition.
© 2016 The Protein Society.

Entities:  

Keywords:  TN1; X-ray crystallography; antigen-antibody interaction; isothermal titration calorimetry; thrombopoietin

Mesh:

Substances:

Year:  2016        PMID: 27419667      PMCID: PMC5029525          DOI: 10.1002/pro.2985

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  62 in total

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Journal:  Biochemistry       Date:  2001-02-13       Impact factor: 3.162

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Authors:  Wesley E. Stites
Journal:  Chem Rev       Date:  1997-08-05       Impact factor: 60.622

4.  Heat capacity effects of water molecules and ions at a protein-DNA interface.

Authors:  Simon Bergqvist; Mark A Williams; Ronan O'Brien; John E Ladbury
Journal:  J Mol Biol       Date:  2004-02-27       Impact factor: 5.469

5.  Molecular basis for nucleotide-binding specificity: role of the exocyclic amino group "N2" in recognition by a guanylyl-ribonuclease.

Authors:  Greta L Schrift; Travis T Waldron; Mitchell A Timmons; S Ramaswamy; William R Kearney; Kenneth P Murphy
Journal:  J Mol Biol       Date:  2005-10-28       Impact factor: 5.469

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Authors:  K P Murphy; E Freire; Y Paterson
Journal:  Proteins       Date:  1995-02

7.  Cross-reactive binding of cyclic peptides to an anti-TGFalpha antibody Fab fragment: an X-ray structural and thermodynamic analysis.

Authors:  M Hahn; D Winkler; K Welfle; R Misselwitz; H Welfle; H Wessner; G Zahn; C Scholz; M Seifert; R Harkins; J Schneider-Mergener; W Höhne
Journal:  J Mol Biol       Date:  2001-11-23       Impact factor: 5.469

8.  Water-mediated protein-DNA interactions: the relationship of thermodynamics to structural detail.

Authors:  C J Morton; J E Ladbury
Journal:  Protein Sci       Date:  1996-10       Impact factor: 6.725

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Authors:  C Clarke; R J Woods; J Gluska; A Cooper; M A Nutley; G J Boons
Journal:  J Am Chem Soc       Date:  2001-12-12       Impact factor: 15.419

10.  Recombinant human megakaryocyte growth and development factor stimulates thrombocytopoiesis in normal nonhuman primates.

Authors:  A M Farese; P Hunt; T Boone; T J MacVittie
Journal:  Blood       Date:  1995-07-01       Impact factor: 22.113

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