| Literature DB >> 27415013 |
Irene Tadeo1, Ana P Berbegall1, Victoria Castel2, Purificación García-Miguel3, Robert Callaghan1, Sven Påhlman4, Samuel Navarro1, Rosa Noguera1.
Abstract
BACKGROUND: Although survival for neuroblastoma patients has dramatically improved in recent years, a substantial number of children in the high-risk subgroup still die.Entities:
Mesh:
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Year: 2016 PMID: 27415013 PMCID: PMC4985353 DOI: 10.1038/bjc.2016.210
Source DB: PubMed Journal: Br J Cancer ISSN: 0007-0920 Impact factor: 7.640
Description of the image analysis process
| Blood vessels | Anti CD31 (Dako, clone JC70A, 1/50) | -Scanner: Aperio ScanScope XT (Aperio, Vista, CA) − × 40 magnification -TIF format | -Individual images -TIFF format -HSV colour model | AngioPath | |
| Ret Fs | Gomori | -Individual images -JPEG format, quality 80 -RGB colour model | Image-Pro Plus (Media Cybernetics, Inc., Silver Spring, MD, USA) | Customised macro: black and dark brown Ret Fs
-Colour adjustments: None
-Segmentation: R 0–181, G 0–178, B 0–172
-Restriction of the shape and size of the objects detected (roundness >3, area >7.5 | |
| Col I Fs | Masson's trichrome | Customised macro: specifically detect thick collagen type I bundles and distinguish them from other thinner blue-stained collagen
-Colour adjustments: colour hues intensified (brightness: 68, contrast: 81, gamma: 1)
-Segmentation: R 0–17, G 0–90, B 255–255
-Restriction of the shape and size of the objects detected (roundness >2, area >7.5 | |||
| Elastic fibres | Orcein | No image analysis was performed: a subset of 69 samples was only subjectively assesed by a pathologist | |||
| GAGs | Alcian blue pH 2.5 Stain Kit (Artisan, Dako) | -Whole-digitised slide (identification of cylinders corresponding to the different samples) -TIFF format -RGB colour model | Aperio ImageScope | Positive pixel count: -Colour adjustments: None -Segmentation: RGB >221 -Remaining parameters set by default | |
Abbreviations: Col I Fs=collagen type I fibres; GAGs=glycosaminoglycans; HC=histochemistry ; HSV=hue, saturation and value colour model; IHC=immunohistochemistry; JPEG=joint photographic expert group format; Ret Fs=reticulin fibres; RGB=red, green and blue colour model; TIFF=tagged image file format.
Angiopath: self-designed tool (Fernandez-Carrobles ) with minor modifications. In all cases, large trabeculae were excluded.
Description of the morphometric variables
Figure 1Examples and schematic representations showing how blood vessels and Ret Fs behave in the ECM of non-high-risk, high-risk and ultra-high-risk patients. Ret Fs and blood-vessel binarized images are shown in small squares. (A) Non-high-risk sample with predominant capillaries and scant presence and irregularity of sinusoids. (B) High-risk sample with predominantly large sinusoids. (C) Ultra-high-risk sample with irregularly shaped blood vessels, small and abundant sinusoids and small and very irregular venules and arterioles (arterioles in this specific sample). (D) Non-high-risk sample with reduced %SA, low crosslinking and smooth outlines. (E) High-risk sample with curvy, crosslinked and non-ordered Ret Fs network. (F) Ultra-high-risk sample with much more haphazardly arranged and cross-linked Ret Fs networks, forming a less porous and stiffer ECM. Data corresponding to non-high-risk patients are not shown.
Figure 2Kaplan–Meier graphs showing the different accumulated EFS or OS depending on different variables. In all cases, the straight line corresponds to the group under the data used for dichotomization, and the discontinuous line corresponds to the group over the data used of dichotomization. These data are shown in Table 3. P-values and survival rates are shown. (A–D) Blood vessels morphometric variables. (A) Shape factor of total blood vascularisation. (B) Area of sinusoids. (C) Area of venules and arterioles. (D) Roundness of venules and arterioles. (E–J) Ret Fs morphometric variables. (E) SA. (F) Width. (G) Roundness. (H) Perimeter ratio. (I) Fractal dimension. (J) Branching. (K) Patients grouped depending of the amount of morphometric variables related to ultra-high-risk of progression. (L) Definition of ultra-high-risk patients according to clinical and biological factors (definition currently under debate).
Survival data of the morphometric variables with prognostic impact
| A) Total vascularisation: shape factor | 0.022 EFS | |||
| ⩽Q1 (Q1=0.28, range 0.17–5.24) | 14/22 | 54.5±10.6 | 40.9±10.5 | |
| >Q1 | 48/52 | 36.5±6.7 | 9.6±4.1 | |
| B) Sinusoids: area | 0.014 EFS | |||
| ⩽Q2 (Q2=213.7 | 32/35 | 37.1±8.2 | 8.6±4.7 | |
| >Q2 | 26/35 | 57.1±8.4 | 31.4±7.8 | |
| C) Venules and arterioles: area | 0.011 OS | |||
| ⩽Q2 (Q2=877.8 | 27/29 | 51.7±9.3 | 10.3±5.7 | |
| >Q2 | 20/27 | 70.4±8.8 | 37.0±9.3 | |
| D) Venules and arterioles: roundness | 0.016 OS | |||
| ⩽Q1 (Q1=7.2, range 2–15) | 10/15 | 86.78.8 | 46.712.9 | |
| >Q1 | 37/41 | 51.27.8 | 14.65.5 | |
| E) Ret Fs: SA | 0.001 EFS | |||
| ⩽Q2 (Q2=5.8%, range 0.23–39.4) | 29/41 | 52.4±7.7 | 38.1±7.5 | |
| >Q2 | 40/43 | 40.5±7.6 | 9.5±4.5 | |
| F) Ret Fs: width | 0.007 EFS | |||
| ⩽Q2 (Q2=8.5 | 29/41 | 53.7±7.8 | 36.6±7.5 | |
| >Q2 | 40/43 | 39.5±7.5 | 11.6±4.9 | |
| G) Ret Fs: roundness | 0.002 EFS | |||
| ⩽Q2 (Q2=6.9, range 4.2–12.9) | 30/43 | 55.8±7.6 | 37.2±7.4 | |
| >Q2 | 39/41 | 36.6±7.5 | 9.8±4.6 | |
| H) Ret Fs: perimeter ratio | 0.032 EFS | |||
| ⩽Q2 (Q2=0.89, range 0.86–0.96) | 51/55 | 36.4±7.3 | 15.9±5.5 | |
| >Q2 | 28/29 | 57.5±7.8 | 32.5±7.4 | |
| I) Ret Fs: fractal dimension | 0.026 EFS | |||
| ⩽Q2 (Q2=1.17, range 1.09–1.25) | 51/55 | 50.9±6.7 | 32.7±6.3 | |
| >Q2 | 28/29 | 37.9±9.0 | 6.9±4.7 | |
| J) Ret Fs: branching | 0.003 EFS | |||
| ⩽Q2 (Q2=0.12, range 0.01–0.35) | 37/40 | 54.5±7.5 | 38.6±7.3 | |
| >Q2 | 32/44 | 37.5±7.7 | 7.5±4.2 | |
| K) Risk according to vascular/ECM: morphometric classifier | 0.000 | |||
| 0–1 morphometric variables | 15/26 | 69.2±9.1 | 53.8±9.8 | |
| 2–7 morphometric variables | 54/58 | 36.2±6.3 | 10.3±4.0 | |
| L) Risk according to clinical and biological factors | 0.000 | |||
| death ⩽18 months | 32/32 | 0.0±0.0 | 0.0±0.0 | |
| death >18 months | 37/52 | 80.8±5.5 | 38.5±6.7 |
Abbreviations: ECM=extracellular matrix; EFS=event-free survival; OS=overall survival; Ret Fs=reticulin fibres; SA=stained area; % patient 18 SV±SD=percentage of patients with ⩾18 months survival±s.d.; % patient 60 SV±SD=percentage of patients with ⩾60 months survival±s.d.
Number of specific data: number of patient samples with morphometric parameters over or under the Q1 or Q2 value/total number of patient samples with evaluable and positive staining.
Blood-vessel shape factor affected EFS but was omitted from the morphometric sorter since it included 75% of the samples in the ultra-high-risk group, and was not considered a discriminative variable.
A morphometric classifier is proposed discriminating ultra-high-risk patients who die within 24 months (row labelled K), combining the measurement data values over or under the corresponding quartile (Q) of at least two of the seven morphometric features identified by grey rows. The parameters affecting EFS with potential use for the pretreatment risk stratifications were included in the morphometric classifier. Some parameters affected OS but cannot be used to enhance the pretreatment risk stratification. They were therefore not used for the morphometric classifier. Quartiles: Q1: we dichotomized using the first quartile separating the 25% lowest samples, as the ultra-high-risk subgroup defined by clinical data was a minority within the high-risk cohort; Q2: the median was also used, as being the statistically most accurate value, to dichotomize the variables.
Results of the multivariate Cox regression showing the influence of the vascular and ECM morphometric parameters on survival
| Ret Fs: high SA | 2.13 (1.22–3.72) | 0.007 |
| Sinusoids: small area | 0.61 (0.35–1–05) | 0.077 |
Abbreviations: CI=confidence interval; ECM=extracellular matrix; Ret Fs=reticulin fibres; SA=stained area.