Literature DB >> 27409454

2'-Alkynylnucleotides: A Sequence- and Spin Label-Flexible Strategy for EPR Spectroscopy in DNA.

Marius M Haugland1, Afaf H El-Sagheer1,2, Rachel J Porter1, Javier Peña3, Tom Brown1, Edward A Anderson1, Janet E Lovett4.   

Abstract

Electron paramagnetic resonance (EPR) spectroscopy is a powerful method to elucidate molecular structure through the measurement of distances between conformationally well-defined spin labels. Here we report a sequence-flexible approach to the synthesis of double spin-labeled DNA duplexes, where 2'-alkynylnucleosides are incorporated at terminal and internal positions on complementary strands. Post-DNA synthesis copper-catalyzed azide-alkyne cycloaddition (CuAAC) reactions with a variety of spin labels enable the use of double electron-electron resonance experiments to measure a number of distances on the duplex, affording a high level of detailed structural information.

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Year:  2016        PMID: 27409454     DOI: 10.1021/jacs.6b05421

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  12 in total

1.  Reduction kinetics and electrochemistry of tetracarboxylate nitroxides.

Authors:  Shengdian Huang; Hui Zhang; Joseph T Paletta; Suchada Rajca; Andrzej Rajca
Journal:  Free Radic Res       Date:  2018-02-27

2.  Aminoxyl-Catalyzed Electrochemical Diazidation of Alkenes Mediated by a Metastable Charge-Transfer Complex.

Authors:  Juno C Siu; Joseph B Parry; Song Lin
Journal:  J Am Chem Soc       Date:  2019-01-28       Impact factor: 15.419

Review 3.  Total RNA Synthesis and its Covalent Labeling Innovation.

Authors:  Hongling Zhou; Yuanyuan Li; Youfang Gan; Rui Wang
Journal:  Top Curr Chem (Cham)       Date:  2022-02-26

Review 4.  Paramagnetic Chemical Probes for Studying Biological Macromolecules.

Authors:  Qing Miao; Christoph Nitsche; Henry Orton; Mark Overhand; Gottfried Otting; Marcellus Ubbink
Journal:  Chem Rev       Date:  2022-01-27       Impact factor: 72.087

5.  2'-Alkynyl spin-labelling is a minimally perturbing tool for DNA structural analysis.

Authors:  Jack S Hardwick; Marius M Haugland; Afaf H El-Sagheer; Denis Ptchelkine; Frank R Beierlein; Andrew N Lane; Tom Brown; Janet E Lovett; Edward A Anderson
Journal:  Nucleic Acids Res       Date:  2020-04-06       Impact factor: 16.971

Review 6.  Triazole-Modified Nucleic Acids for the Application in Bioorganic and Medicinal Chemistry.

Authors:  Dagmara Baraniak; Jerzy Boryski
Journal:  Biomedicines       Date:  2021-05-31

7.  Phosphoramidite building blocks with protected nitroxides for the synthesis of spin-labeled DNA and RNA.

Authors:  Timo Weinrich; Eva A Jaumann; Ute M Scheffer; Thomas F Prisner; Michael W Göbel
Journal:  Beilstein J Org Chem       Date:  2018-06-26       Impact factor: 2.883

8.  Synthesis and applications of highly functionalized 1-halo-3-substituted bicyclo[1.1.1]pentanes.

Authors:  Dimitri F J Caputo; Carlos Arroniz; Alexander B Dürr; James J Mousseau; Antonia F Stepan; Steven J Mansfield; Edward A Anderson
Journal:  Chem Sci       Date:  2018-05-21       Impact factor: 9.825

9.  Isoindoline-Based Nitroxides as Bioresistant Spin Labels for Protein Labeling through Cysteines and Alkyne-Bearing Noncanonical Amino Acids.

Authors:  Theresa Sophie Braun; Pia Widder; Uwe Osswald; Lina Groß; Lara Williams; Moritz Schmidt; Irina Helmle; Daniel Summerer; Malte Drescher
Journal:  Chembiochem       Date:  2019-12-06       Impact factor: 3.164

10.  Cu2+-based distance measurements by pulsed EPR provide distance constraints for DNA backbone conformations in solution.

Authors:  Shreya Ghosh; Matthew J Lawless; Hanna J Brubaker; Kevin Singewald; Michael R Kurpiewski; Linda Jen-Jacobson; Sunil Saxena
Journal:  Nucleic Acids Res       Date:  2020-05-21       Impact factor: 16.971

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