Literature DB >> 27406798

Lead optimization of a pyrazolo[1,5-a]pyrimidin-7(4H)-one scaffold to identify potent, selective and orally bioavailable KDM5 inhibitors suitable for in vivo biological studies.

Jun Liang1, Birong Zhang2, Sharada Labadie2, Daniel F Ortwine2, Maia Vinogradova2, James R Kiefer2, Victor S Gehling3, Jean-Christophe Harmange3, Richard Cummings3, Tommy Lai4, Jiangpeng Liao4, Xiaoping Zheng4, Yichin Liu2, Amy Gustafson2, Erica Van der Porten2, Weifeng Mao4, Bianca M Liederer2, Gauri Deshmukh2, Marie Classon2, Patrick Trojer3, Peter S Dragovich2, Lesley Murray2.   

Abstract

Starting with a lead [1,5-a]pyrimidin-7(4H)-one-containing molecule (1), we generated potent, selective and orally bioavailable KDM5 inhibitors. Using structure- and property-based approaches, we designed 48 with improved cell potency (PC9 H3K4Me3 EC50=0.34μM). Furthermore, 48 maintained suitable physiochemical properties and displayed an excellent pharmacokinetic (PK) profile in mice. When dosed orally in mice at 50mg/kg twice a day (BID), 48 showed an unbound maximal plasma concentration (Cmax) >15-fold over its cell EC50, thereby providing a robust chemical probe for studying KDM5 biological functions in vivo.
Copyright © 2016 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  Drug resistance; Epigenetics; Histone demethylase; KDM5; Lead optimization; Selective KDM5 inhibitors

Mesh:

Substances:

Year:  2016        PMID: 27406798     DOI: 10.1016/j.bmcl.2016.06.078

Source DB:  PubMed          Journal:  Bioorg Med Chem Lett        ISSN: 0960-894X            Impact factor:   2.823


  15 in total

Review 1.  Inhibitors of Protein Methyltransferases and Demethylases.

Authors:  H Ümit Kaniskan; Michael L Martini; Jian Jin
Journal:  Chem Rev       Date:  2017-03-24       Impact factor: 60.622

Review 2.  KDM5B is a master regulator of the H3K4-methylome in stem cells, development and cancer.

Authors:  Besa Xhabija; Benjamin L Kidder
Journal:  Semin Cancer Biol       Date:  2018-11-16       Impact factor: 15.707

3.  KDM5 Histone Demethylase Activity Links Cellular Transcriptomic Heterogeneity to Therapeutic Resistance.

Authors:  Kunihiko Hinohara; Hua-Jun Wu; Sébastien Vigneau; Thomas O McDonald; Kyomi J Igarashi; Kimiyo N Yamamoto; Thomas Madsen; Anne Fassl; Shawn B Egri; Malvina Papanastasiou; Lina Ding; Guillermo Peluffo; Ofir Cohen; Stephen C Kales; Madhu Lal-Nag; Ganesha Rai; David J Maloney; Ajit Jadhav; Anton Simeonov; Nikhil Wagle; Myles Brown; Alexander Meissner; Piotr Sicinski; Jacob D Jaffe; Rinath Jeselsohn; Alexander A Gimelbrant; Franziska Michor; Kornelia Polyak
Journal:  Cancer Cell       Date:  2018-11-21       Impact factor: 31.743

4.  KDM5B Promotes Drug Resistance by Regulating Melanoma-Propagating Cell Subpopulations.

Authors:  Xiaoni Liu; Shang-Min Zhang; Marcus W Bosenberg; Qin Yan; Meaghan K McGeary; Irina Krykbaeva; Ling Lai; Daniel J Jansen; Stephen C Kales; Anton Simeonov; Matthew D Hall; Daniel P Kelly
Journal:  Mol Cancer Ther       Date:  2018-12-06       Impact factor: 6.261

5.  Potent and Selective KDM5 Inhibitor Stops Cellular Demethylation of H3K4me3 at Transcription Start Sites and Proliferation of MM1S Myeloma Cells.

Authors:  Anthony Tumber; Andrea Nuzzi; Edward S Hookway; Stephanie B Hatch; Srikannathasan Velupillai; Catrine Johansson; Akane Kawamura; Pavel Savitsky; Clarence Yapp; Aleksandra Szykowska; Na Wu; Chas Bountra; Claire Strain-Damerell; Nicola A Burgess-Brown; Gian Filippo Ruda; Oleg Fedorov; Shonagh Munro; Katherine S England; Radoslaw P Nowak; Christopher J Schofield; Nicholas B La Thangue; Charlotte Pawlyn; Faith Davies; Gareth Morgan; Nick Athanasou; Susanne Müller; Udo Oppermann; Paul E Brennan
Journal:  Cell Chem Biol       Date:  2017-03-02       Impact factor: 8.116

6.  Assessing histone demethylase inhibitors in cells: lessons learned.

Authors:  Stephanie B Hatch; Clarence Yapp; Raquel C Montenegro; Pavel Savitsky; Vicki Gamble; Anthony Tumber; Gian Filippo Ruda; Vassilios Bavetsias; Oleg Fedorov; Butrus Atrash; Florence Raynaud; Rachel Lanigan; LeAnne Carmichael; Kathy Tomlin; Rosemary Burke; Susan M Westaway; Jack A Brown; Rab K Prinjha; Elisabeth D Martinez; Udo Oppermann; Christopher J Schofield; Chas Bountra; Akane Kawamura; Julian Blagg; Paul E Brennan; Olivia Rossanese; Susanne Müller
Journal:  Epigenetics Chromatin       Date:  2017-03-01       Impact factor: 4.954

7.  Synthesis of pyrazolopyrimidinones using a "one-pot" approach under microwave irradiation.

Authors:  Mark Kelada; John M D Walsh; Robert W Devine; Patrick McArdle; John C Stephens
Journal:  Beilstein J Org Chem       Date:  2018-05-28       Impact factor: 2.883

8.  Identifying Small-Molecule Binding Sites for Epigenetic Proteins at Domain-Domain Interfaces.

Authors:  David Bowkett; Romain Talon; Cynthia Tallant; Chris Schofield; Frank von Delft; Stefan Knapp; Gordon Bruton; Paul E Brennan
Journal:  ChemMedChem       Date:  2018-04-17       Impact factor: 3.466

9.  Discovery of a Highly Selective Cell-Active Inhibitor of the Histone Lysine Demethylases KDM2/7.

Authors:  Philip A Gerken; Jamie R Wolstenhulme; Anthony Tumber; Stephanie B Hatch; Yijia Zhang; Susanne Müller; Shane A Chandler; Barbara Mair; Fengling Li; Sebastian M B Nijman; Rebecca Konietzny; Tamas Szommer; Clarence Yapp; Oleg Fedorov; Justin L P Benesch; Masoud Vedadi; Benedikt M Kessler; Akane Kawamura; Paul E Brennan; Martin D Smith
Journal:  Angew Chem Int Ed Engl       Date:  2017-11-07       Impact factor: 15.336

10.  KDM5 histone demethylases repress immune response via suppression of STING.

Authors:  Lizhen Wu; Jian Cao; Wesley L Cai; Sabine M Lang; John R Horton; Daniel J Jansen; Zongzhi Z Liu; Jocelyn F Chen; Meiling Zhang; Bryan T Mott; Katherine Pohida; Ganesha Rai; Stephen C Kales; Mark J Henderson; Xin Hu; Ajit Jadhav; David J Maloney; Anton Simeonov; Shu Zhu; Akiko Iwasaki; Matthew D Hall; Xiaodong Cheng; Gerald S Shadel; Qin Yan
Journal:  PLoS Biol       Date:  2018-08-06       Impact factor: 9.593

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