Literature DB >> 27406249

Novel microdeletions on chromosome 14q32.2 suggest a potential role for non-coding RNAs in Kagami-Ogata syndrome.

Ilse M van der Werf1, Karin Buiting2, Christina Czeschik2, Edwin Reyniers1, Geert Vandeweyer1, Piet Vanhaesebrouck3, Hermann-Josef Lüdecke2, Dagmar Wieczorek2,4, Bernhard Horsthemke2, Geert Mortier1, Jules G Leroy5, R Frank Kooy1.   

Abstract

In approximately 20% of individuals with Kagami-Ogata syndrome (KOS14, MIM 608149), characterized by a bell-shaped thorax with coat-hanger configuration of the ribs, joint contractures, abdominal wall defects and polyhydramnios during the pregnancy, the syndrome is caused by a maternal deletion of the imprinted gene cluster in chromosome 14q32.2. Most deletions reported so far included one or both of the differentially methylated regions (DMRs) - DLK1/MEG3 IG-DMR and MEG3-DMR. We present two unrelated families with two affected siblings each, presenting with classical KOS14 due to maternally inherited microdeletions. Interestingly, all four patients have lived through to adulthood, even though mortality rates for patients with KOS14 due to a microdeletion are relatively high. In the first family, none of the DMRs is included in the deletion and the methylation status is identical to that of controls. Deletions that do not encompass the DMRs in this region are thus sufficient to elicit the full KOS14 phenotype. In the second family, a partially overlapping deletion including both DMRs and MEG3 was detected. In summary, we show that patients with KOS14 can live into adulthood, that causal deletions do not have to include the DMRs and that consequently a normal methylation pattern does not exclude KOS14.

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Year:  2016        PMID: 27406249      PMCID: PMC5117931          DOI: 10.1038/ejhg.2016.82

Source DB:  PubMed          Journal:  Eur J Hum Genet        ISSN: 1018-4813            Impact factor:   4.246


  21 in total

1.  Asymmetric regulation of imprinting on the maternal and paternal chromosomes at the Dlk1-Gtl2 imprinted cluster on mouse chromosome 12.

Authors:  Shau-Ping Lin; Neil Youngson; Shuji Takada; Hervé Seitz; Wolf Reik; Martina Paulsen; Jerome Cavaille; Anne C Ferguson-Smith
Journal:  Nat Genet       Date:  2003-08-24       Impact factor: 38.330

Review 2.  Accurate and objective copy number profiling using real-time quantitative PCR.

Authors:  Barbara D'haene; Jo Vandesompele; Jan Hellemans
Journal:  Methods       Date:  2010-01-06       Impact factor: 3.608

Review 3.  Mechanisms for recurrent and complex human genomic rearrangements.

Authors:  Pengfei Liu; Claudia M B Carvalho; P J Hastings; James R Lupski
Journal:  Curr Opin Genet Dev       Date:  2012-03-20       Impact factor: 5.578

4.  Targeted sequencing by proximity ligation for comprehensive variant detection and local haplotyping.

Authors:  Paula J P de Vree; Elzo de Wit; Mehmet Yilmaz; Monique van de Heijning; Petra Klous; Marjon J A M Verstegen; Yi Wan; Hans Teunissen; Peter H L Krijger; Geert Geeven; Paul P Eijk; Daoud Sie; Bauke Ylstra; Lorette O M Hulsman; Marieke F van Dooren; Laura J C M van Zutven; Ans van den Ouweland; Sjef Verbeek; Ko Willems van Dijk; Marion Cornelissen; Atze T Das; Ben Berkhout; Birgit Sikkema-Raddatz; Eva van den Berg; Pieter van der Vlies; Desiree Weening; Johan T den Dunnen; Magdalena Matusiak; Mohamed Lamkanfi; Marjolijn J L Ligtenberg; Petra ter Brugge; Jos Jonkers; John A Foekens; John W Martens; Rob van der Luijt; Hans Kristian Ploos van Amstel; Max van Min; Erik Splinter; Wouter de Laat
Journal:  Nat Biotechnol       Date:  2014-08-17       Impact factor: 54.908

5.  Comparative sequence analysis of the imprinted Dlk1-Gtl2 locus in three mammalian species reveals highly conserved genomic elements and refines comparison with the Igf2-H19 region.

Authors:  M Paulsen; S Takada; N A Youngson; M Benchaib; C Charlier; K Segers; M Georges; A C Ferguson-Smith
Journal:  Genome Res       Date:  2001-12       Impact factor: 9.043

6.  The IG-DMR and the MEG3-DMR at human chromosome 14q32.2: hierarchical interaction and distinct functional properties as imprinting control centers.

Authors:  Masayo Kagami; Maureen J O'Sullivan; Andrew J Green; Yoshiyuki Watabe; Osamu Arisaka; Nobuhide Masawa; Kentarou Matsuoka; Maki Fukami; Keiko Matsubara; Fumiko Kato; Anne C Ferguson-Smith; Tsutomu Ogata
Journal:  PLoS Genet       Date:  2010-06-17       Impact factor: 5.917

7.  Relative frequency of underlying genetic causes for the development of UPD(14)pat-like phenotype.

Authors:  Masayo Kagami; Fumiko Kato; Keiko Matsubara; Tomoko Sato; Gen Nishimura; Tsutomu Ogata
Journal:  Eur J Hum Genet       Date:  2012-02-22       Impact factor: 4.246

8.  Comprehensive clinical studies in 34 patients with molecularly defined UPD(14)pat and related conditions (Kagami-Ogata syndrome).

Authors:  Masayo Kagami; Kenji Kurosawa; Osamu Miyazaki; Fumitoshi Ishino; Kentaro Matsuoka; Tsutomu Ogata
Journal:  Eur J Hum Genet       Date:  2015-02-18       Impact factor: 4.246

9.  The molecular function and clinical phenotype of partial deletions of the IGF2/H19 imprinting control region depends on the spatial arrangement of the remaining CTCF-binding sites.

Authors:  Jasmin Beygo; Valentina Citro; Angela Sparago; Agostina De Crescenzo; Flavia Cerrato; Melanie Heitmann; Katrin Rademacher; Andrea Guala; Thorsten Enklaar; Cecilia Anichini; Margherita Cirillo Silengo; Notker Graf; Dirk Prawitt; Maria Vittoria Cubellis; Bernhard Horsthemke; Karin Buiting; Andrea Riccio
Journal:  Hum Mol Genet       Date:  2012-10-30       Impact factor: 6.150

10.  Paternal uniparental disomy 14 and related disorders: placental gene expression analyses and histological examinations.

Authors:  Masayo Kagami; Kentaro Matsuoka; Toshiro Nagai; Michiko Yamanaka; Kenji Kurosawa; Nobuhiro Suzumori; Yoichi Sekita; Mami Miyado; Keiko Matsubara; Tomoko Fuke; Fumiko Kato; Maki Fukami; Tsutomu Ogata
Journal:  Epigenetics       Date:  2012-08-23       Impact factor: 4.528

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  10 in total

1.  New insights into the imprinted MEG8-DMR in 14q32 and clinical and molecular description of novel patients with Temple syndrome.

Authors:  Jasmin Beygo; Alma Küchler; Gabriele Gillessen-Kaesbach; Beate Albrecht; Jonas Eckle; Thomas Eggermann; Alexandra Gellhaus; Deniz Kanber; Ulrike Kordaß; Hermann-Josef Lüdecke; Sabine Purmann; Eva Rossier; Johannes van de Nes; Ilse M van der Werf; Maren Wenzel; Dagmar Wieczorek; Bernhard Horsthemke; Karin Buiting
Journal:  Eur J Hum Genet       Date:  2017-06-21       Impact factor: 4.246

2.  Measurement of genetic diseases as a cause of mortality in infants receiving whole genome sequencing.

Authors:  Stephen F Kingsmore; Audrey Henderson; Mallory J Owen; Michelle M Clark; Christian Hansen; David Dimmock; Christina D Chambers; Laura L Jeliffe-Pawlowski; Charlotte Hobbs
Journal:  NPJ Genom Med       Date:  2020-11-02       Impact factor: 8.617

3.  Maternally inherited 133kb deletion of 14q32 causing Kagami-Ogata syndrome.

Authors:  Hou-Sung Jung; Stephanie E Vallee; Mary Beth Dinulos; Gregory J Tsongalis; Joel A Lefferts
Journal:  J Hum Genet       Date:  2018-09-19       Impact factor: 3.172

4.  Kagami-Ogata Syndrome: Case Series and Review of Literature.

Authors:  Rishika P Sakaria; Roya Mostafavi; Stephen Miller; Jewell C Ward; Eniko K Pivnick; Ajay J Talati
Journal:  AJP Rep       Date:  2021-05-27

5.  Syndromic Disorders Caused by Disturbed Human Imprinting

Authors:  Diana Carli; Evelise Riberi; Giovanni Battista Ferrero; Alessandro Mussa
Journal:  J Clin Res Pediatr Endocrinol       Date:  2019-04-10

6.  CTCF modulates allele-specific sub-TAD organization and imprinted gene activity at the mouse Dlk1-Dio3 and Igf2-H19 domains.

Authors:  David Llères; Benoît Moindrot; Rakesh Pathak; Vincent Piras; Mélody Matelot; Benoît Pignard; Alice Marchand; Mallory Poncelet; Aurélien Perrin; Virgile Tellier; Robert Feil; Daan Noordermeer
Journal:  Genome Biol       Date:  2019-12-12       Impact factor: 13.583

7.  Case report: Prenatal diagnosis of Kagami-Ogata syndrome in a Chinese family.

Authors:  Junjie Hu; Ying Zhang; Yanmei Yang; Liya Wang; Yixi Sun; Minyue Dong
Journal:  Front Genet       Date:  2022-08-11       Impact factor: 4.772

Review 8.  DNA Methylation in the Diagnosis of Monogenic Diseases.

Authors:  Flavia Cerrato; Angela Sparago; Francesca Ariani; Fulvia Brugnoletti; Luciano Calzari; Fabio Coppedè; Alessandro De Luca; Cristina Gervasini; Emiliano Giardina; Fiorella Gurrieri; Cristiana Lo Nigro; Giuseppe Merla; Monica Miozzo; Silvia Russo; Eugenio Sangiorgi; Silvia M Sirchia; Gabriella Maria Squeo; Silvia Tabano; Elisabetta Tabolacci; Isabella Torrente; Maurizio Genuardi; Giovanni Neri; Andrea Riccio
Journal:  Genes (Basel)       Date:  2020-03-26       Impact factor: 4.096

9.  A Male Case of Kagami-Ogata Syndrome Caused by Paternal Unipaternal Disomy 14 as a Result of a Robertsonian Translocation.

Authors:  Xiaoxue Wang; Hui Pang; Birju A Shah; Hongcang Gu; Lijun Zhang; Hua Wang
Journal:  Front Pediatr       Date:  2020-03-10       Impact factor: 3.418

10.  Measurement of genetic diseases as a cause of mortality in infants receiving whole genome sequencing.

Authors:  Stephen F Kingsmore; Audrey Henderson; Mallory J Owen; Michelle M Clark; Christian Hansen; David Dimmock; Christina D Chambers; Laura L Jeliffe-Pawlowski; Charlotte Hobbs
Journal:  NPJ Genom Med       Date:  2020-11-02       Impact factor: 8.617

  10 in total

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