Literature DB >> 27402448

Conformational Change in the Active Site of Streptococcal Unsaturated Glucuronyl Hydrolase Through Site-Directed Mutagenesis at Asp-115.

Yusuke Nakamichi1,2, Sayoko Oiki1, Bunzo Mikami3, Kousaku Murata1,4, Wataru Hashimoto5.   

Abstract

Bacterial unsaturated glucuronyl hydrolase (UGL) degrades unsaturated disaccharides generated from mammalian extracellular matrices, glycosaminoglycans, by polysaccharide lyases. Two Asp residues, Asp-115 and Asp-175 of Streptococcus agalactiae UGL (SagUGL), are completely conserved in other bacterial UGLs, one of which (Asp-175 of SagUGL) acts as a general acid and base catalyst. The other Asp (Asp-115 of SagUGL) also affects the enzyme activity, although its role in the enzyme reaction has not been well understood. Here, we show substitution of Asp-115 in SagUGL with Asn caused a conformational change in the active site. Tertiary structures of SagUGL mutants D115N and D115N/K370S with negligible enzyme activity were determined at 2.00 and 1.79 Å resolution, respectively, by X-ray crystallography. The side chain of Asn-115 is drastically shifted in both mutants owing to the interaction with several residues, including Asp-175, by formation of hydrogen bonds. This interaction between Asn-115 and Asp-175 probably prevents the mutants from triggering the enzyme reaction using Asp-175 as an acid catalyst.

Entities:  

Keywords:  Glycosaminoglycan; Streptococcus; Unsaturated glucuronyl hydrolase; X-ray crystallography

Mesh:

Substances:

Year:  2016        PMID: 27402448     DOI: 10.1007/s10930-016-9673-y

Source DB:  PubMed          Journal:  Protein J        ISSN: 1572-3887            Impact factor:   2.371


  31 in total

1.  Substrate recognition by unsaturated glucuronyl hydrolase from Bacillus sp. GL1.

Authors:  Takafumi Itoh; Wataru Hashimoto; Bunzo Mikami; Kousaku Murata
Journal:  Biochem Biophys Res Commun       Date:  2006-05-26       Impact factor: 3.575

2.  Role of hyaluronidase in subcutaneous spread and growth of group A streptococcus.

Authors:  Clarise Rivera Starr; N Cary Engleberg
Journal:  Infect Immun       Date:  2006-01       Impact factor: 3.441

3.  Experimental pneumococcal meningitis in mice: a model of intranasal infection.

Authors:  P J Zwijnenburg; T van der Poll; S Florquin; S J van Deventer; J J Roord; A M van Furth
Journal:  J Infect Dis       Date:  2001-03-01       Impact factor: 5.226

Review 4.  Recognition of Streptococcus pneumoniae by the innate immune system.

Authors:  Uwe Koppe; Norbert Suttorp; Bastian Opitz
Journal:  Cell Microbiol       Date:  2012-02-08       Impact factor: 3.715

Review 5.  Surface proteins of Streptococcus agalactiae and related proteins in other bacterial pathogens.

Authors:  Gunnar Lindahl; Margaretha Stålhammar-Carlemalm; Thomas Areschoug
Journal:  Clin Microbiol Rev       Date:  2005-01       Impact factor: 26.132

6.  Unsaturated glucuronyl hydrolase of Bacillus sp. GL1: novel enzyme prerequisite for metabolism of unsaturated oligosaccharides produced by polysaccharide lyases.

Authors:  W Hashimoto; E Kobayashi; H Nankai; N Sato; T Miya; S Kawai; K Murata
Journal:  Arch Biochem Biophys       Date:  1999-08-15       Impact factor: 4.013

7.  Structural determinants in streptococcal unsaturated glucuronyl hydrolase for recognition of glycosaminoglycan sulfate groups.

Authors:  Yusuke Nakamichi; Yukie Maruyama; Bunzo Mikami; Wataru Hashimoto; Kousaku Murata
Journal:  J Biol Chem       Date:  2010-12-08       Impact factor: 5.157

8.  Features and development of Coot.

Authors:  P Emsley; B Lohkamp; W G Scott; K Cowtan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24

9.  A study of pathogenic factors of Streptococcus pneumoniae strains causing meningitis.

Authors:  N N Kostyukova; M O Volkova; V V Ivanova; A S Kvetnaya
Journal:  FEMS Immunol Med Microbiol       Date:  1995-01

Review 10.  The pathogenesis of streptococcal infections: from tooth decay to meningitis.

Authors:  Timothy J Mitchell
Journal:  Nat Rev Microbiol       Date:  2003-12       Impact factor: 60.633

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