Literature DB >> 21147778

Structural determinants in streptococcal unsaturated glucuronyl hydrolase for recognition of glycosaminoglycan sulfate groups.

Yusuke Nakamichi1, Yukie Maruyama, Bunzo Mikami, Wataru Hashimoto, Kousaku Murata.   

Abstract

Pathogenic Streptococcus agalactiae produces polysaccharide lyases and unsaturated glucuronyl hydrolase (UGL), which are prerequisite for complete degradation of mammalian extracellular matrices, including glycosaminoglycans such as chondroitin and hyaluronan. Unlike the Bacillus enzyme, streptococcal UGLs prefer sulfated glycosaminoglycans. Here, we show the loop flexibility for substrate binding and structural determinants for recognition of glycosaminoglycan sulfate groups in S. agalactiae UGL (SagUGL). UGL also degraded unsaturated heparin disaccharides; this indicates that the enzyme released unsaturated iduronic and glucuronic acids from substrates. We determined the crystal structures of SagUGL wild-type enzyme and both substrate-free and substrate-bound D175N mutants by x-ray crystallography and noted that the loop over the active cleft exhibits flexible motion for substrate binding. Several residues in the active cleft bind to the substrate, unsaturated chondroitin disaccharide with a sulfate group at the C-6 position of GalNAc residue. The sulfate group is hydrogen-bonded to Ser-365 and Ser-368 and close to Lys-370. As compared with wild-type enzyme, S365H, S368G, and K370I mutants exhibited higher Michaelis constants toward the substrate. The conversion of SagUGL to Bacillus sp. GL1 UGL-like enzyme via site-directed mutagenesis demonstrated that Ser-365 and Lys-370 are essential for direct binding and for electrostatic interaction, respectively, for recognition of the sulfate group by SagUGL. Molecular conversion was also achieved in SagUGL Arg-236 with an affinity for the sulfate group at the C-4 position of the GalNAc residue. These residues binding to sulfate groups are frequently conserved in pathogenic bacterial UGLs, suggesting that the motif "R-//-SXX(S)XK" (where the hyphen and slash marks in the motif indicate the presence of over 100 residues in the enzyme and parentheses indicate that Ser-368 makes little contribution to enzyme activity) is crucial for degradation of sulfated glycosaminoglycans.

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Year:  2010        PMID: 21147778      PMCID: PMC3057837          DOI: 10.1074/jbc.M110.182618

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  44 in total

1.  The Protein Data Bank.

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2.  The extracellular hyaluronidase gene (hylA) of Streptococcus pyogenes.

Authors:  W L Hynes; A R Dixon; S L Walton; L J Aridgides
Journal:  FEMS Microbiol Lett       Date:  2000-03-01       Impact factor: 2.742

3.  Electrostatics of nanosystems: application to microtubules and the ribosome.

Authors:  N A Baker; D Sept; S Joseph; M J Holst; J A McCammon
Journal:  Proc Natl Acad Sci U S A       Date:  2001-08-21       Impact factor: 11.205

4.  Isolation and expression in Escherichia coli of cslA and cslB, genes coding for the chondroitin sulfate-degrading enzymes chondroitinase AC and chondroitinase B, respectively, from Flavobacterium heparinum.

Authors:  A L Tkalec; D Fink; F Blain; G Zhang-Sun; M Laliberte; D C Bennett; K Gu; J J Zimmermann; H Su
Journal:  Appl Environ Microbiol       Date:  2000-01       Impact factor: 4.792

5.  Unsaturated glucuronyl hydrolase of Bacillus sp. GL1: novel enzyme prerequisite for metabolism of unsaturated oligosaccharides produced by polysaccharide lyases.

Authors:  W Hashimoto; E Kobayashi; H Nankai; N Sato; T Miya; S Kawai; K Murata
Journal:  Arch Biochem Biophys       Date:  1999-08-15       Impact factor: 4.013

6.  Structural basis of hyaluronan degradation by Streptococcus pneumoniae hyaluronate lyase.

Authors:  S Li; S J Kelly; E Lamani; M Ferraroni; M J Jedrzejas
Journal:  EMBO J       Date:  2000-03-15       Impact factor: 11.598

7.  Molecular cloning of the heparin/heparan sulfate delta 4,5 unsaturated glycuronidase from Flavobacterium heparinum, its recombinant expression in Escherichia coli, and biochemical determination of its unique substrate specificity.

Authors:  James R Myette; Zachary Shriver; Tanyel Kiziltepe; Maitland W McLean; Ganesh Venkataraman; Ram Sasisekharan
Journal:  Biochemistry       Date:  2002-06-11       Impact factor: 3.162

8.  Chondroitinase ABC promotes functional recovery after spinal cord injury.

Authors:  Elizabeth J Bradbury; Lawrence D F Moon; Reena J Popat; Von R King; Gavin S Bennett; Preena N Patel; James W Fawcett; Stephen B McMahon
Journal:  Nature       Date:  2002-04-11       Impact factor: 49.962

9.  A novel member of glycoside hydrolase family 88: overexpression, purification, and characterization of unsaturated beta-glucuronyl hydrolase of Bacillus sp. GL1.

Authors:  Shigetarou Mori; Sae Akao; Hirokazu Nankai; Wataru Hashimoto; Bunzo Mikami; Kousaku Murata
Journal:  Protein Expr Purif       Date:  2003-05       Impact factor: 1.650

10.  Structure and flexibility of Streptococcus agalactiae hyaluronate lyase complex with its substrate. Insights into the mechanism of processive degradation of hyaluronan.

Authors:  Luciane V Mello; Bert L De Groot; Songlin Li; Mark J Jedrzejas
Journal:  J Biol Chem       Date:  2002-07-18       Impact factor: 5.157

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  6 in total

1.  Crystal structure of a bacterial unsaturated glucuronyl hydrolase with specificity for heparin.

Authors:  Yusuke Nakamichi; Bunzo Mikami; Kousaku Murata; Wataru Hashimoto
Journal:  J Biol Chem       Date:  2014-01-08       Impact factor: 5.157

2.  Conformational Change in the Active Site of Streptococcal Unsaturated Glucuronyl Hydrolase Through Site-Directed Mutagenesis at Asp-115.

Authors:  Yusuke Nakamichi; Sayoko Oiki; Bunzo Mikami; Kousaku Murata; Wataru Hashimoto
Journal:  Protein J       Date:  2016-08       Impact factor: 2.371

3.  Metabolic fate of unsaturated glucuronic/iduronic acids from glycosaminoglycans: molecular identification and structure determination of streptococcal isomerase and dehydrogenase.

Authors:  Yukie Maruyama; Sayoko Oiki; Ryuichi Takase; Bunzo Mikami; Kousaku Murata; Wataru Hashimoto
Journal:  J Biol Chem       Date:  2015-01-20       Impact factor: 5.157

4.  Sequencing of glycosaminoglycans with potential to interrogate sequence-specific interactions.

Authors:  Toin H van Kuppevelt; Arie Oosterhof; Elly M M Versteeg; Emina Podhumljak; Els M A van de Westerlo; Willeke F Daamen
Journal:  Sci Rep       Date:  2017-11-01       Impact factor: 4.379

5.  Streptococcal phosphotransferase system imports unsaturated hyaluronan disaccharide derived from host extracellular matrices.

Authors:  Sayoko Oiki; Yusuke Nakamichi; Yukie Maruyama; Bunzo Mikami; Kousaku Murata; Wataru Hashimoto
Journal:  PLoS One       Date:  2019-11-07       Impact factor: 3.240

6.  A bacterial ABC transporter enables import of mammalian host glycosaminoglycans.

Authors:  Sayoko Oiki; Bunzo Mikami; Yukie Maruyama; Kousaku Murata; Wataru Hashimoto
Journal:  Sci Rep       Date:  2017-04-21       Impact factor: 4.379

  6 in total

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