Literature DB >> 27395772

Virocell Metabolism: Metabolic Innovations During Host-Virus Interactions in the Ocean.

Shilo Rosenwasser1, Carmit Ziv1, Shiri Graff van Creveld1, Assaf Vardi2.   

Abstract

Marine viruses are considered to be major ecological, evolutionary, and biogeochemical drivers of the marine environment, responsible for nutrient recycling and determining species composition. Viruses can re-shape their host's metabolic network during infection, generating the virocell-a unique metabolic state that supports their specific requirement. Here we discuss the concept of 'virocell metabolism' and its formation by rewiring of host-encoded metabolic networks, or by introducing virus-encoded auxiliary metabolic genes which provide the virocell with novel metabolic capabilities. The ecological role of marine viruses is commonly assessed by their relative abundance and phylogenetic diversity, lacking the ability to assess the dynamics of active viral infection. The new ability to define a unique metabolic state of the virocell will expand the current virion-centric approaches in order to quantify the impact of marine viruses on microbial food webs.
Copyright © 2016. Published by Elsevier Ltd.

Entities:  

Keywords:  auxiliary metabolic genes; cyanophages; host–virus coevolution; large dsDNA viruses; marine viruses; metabolic networks; virocell phytoplankton

Mesh:

Year:  2016        PMID: 27395772     DOI: 10.1016/j.tim.2016.06.006

Source DB:  PubMed          Journal:  Trends Microbiol        ISSN: 0966-842X            Impact factor:   17.079


  48 in total

1.  Nitrogen sourcing during viral infection of marine cyanobacteria.

Authors:  Jacob R Waldbauer; Maureen L Coleman; Adriana I Rizzo; Kathryn L Campbell; John Lotus; Lichun Zhang
Journal:  Proc Natl Acad Sci U S A       Date:  2019-07-15       Impact factor: 11.205

2.  A persistent giant algal virus, with a unique morphology, encodes an unprecedented number of genes involved in energy metabolism.

Authors:  Romain Blanc-Mathieu; Håkon Dahle; Antje Hofgaard; David Brandt; Hiroki Ban; Jörn Kalinowski; Hiroyuki Ogata; Ruth-Anne Sandaa
Journal:  J Virol       Date:  2021-02-03       Impact factor: 5.103

3.  Energetic cost of building a virus.

Authors:  Gita Mahmoudabadi; Ron Milo; Rob Phillips
Journal:  Proc Natl Acad Sci U S A       Date:  2017-05-16       Impact factor: 11.205

4.  Expression profiling of host and virus during a coccolithophore bloom provides insights into the role of viral infection in promoting carbon export.

Authors:  Uri Sheyn; Shilo Rosenwasser; Yoav Lehahn; Noa Barak-Gavish; Ron Rotkopf; Kay D Bidle; Ilan Koren; Daniella Schatz; Assaf Vardi
Journal:  ISME J       Date:  2018-01-15       Impact factor: 10.302

Review 5.  Revisiting the rules of life for viruses of microorganisms.

Authors:  Adrienne M S Correa; Cristina Howard-Varona; Samantha R Coy; Alison Buchan; Matthew B Sullivan; Joshua S Weitz
Journal:  Nat Rev Microbiol       Date:  2021-03-24       Impact factor: 60.633

Review 6.  The Crossroads between Host Copper Metabolism and Influenza Infection.

Authors:  Ludmila V Puchkova; Irina V Kiseleva; Elena V Polishchuk; Massimo Broggini; Ekaterina Yu Ilyechova
Journal:  Int J Mol Sci       Date:  2021-05-23       Impact factor: 5.923

7.  Potential virus-mediated nitrogen cycling in oxygen-depleted oceanic waters.

Authors:  M Consuelo Gazitúa; Dean R Vik; Simon Roux; Ann C Gregory; Benjamin Bolduc; Brittany Widner; Margaret R Mulholland; Steven J Hallam; Osvaldo Ulloa; Matthew B Sullivan
Journal:  ISME J       Date:  2020-11-16       Impact factor: 10.302

8.  Viral infection of algal blooms leaves a unique metabolic footprint on the dissolved organic matter in the ocean.

Authors:  Constanze Kuhlisch; Guy Schleyer; Nir Shahaf; Flora Vincent; Daniella Schatz; Assaf Vardi
Journal:  Sci Adv       Date:  2021-06-18       Impact factor: 14.136

9.  Viromes outperform total metagenomes in revealing the spatiotemporal patterns of agricultural soil viral communities.

Authors:  Christian Santos-Medellin; Laura A Zinke; Anneliek M Ter Horst; Danielle L Gelardi; Sanjai J Parikh; Joanne B Emerson
Journal:  ISME J       Date:  2021-02-21       Impact factor: 10.302

10.  Expanding standards in viromics: in silico evaluation of dsDNA viral genome identification, classification, and auxiliary metabolic gene curation.

Authors:  Akbar Adjie Pratama; Benjamin Bolduc; Ahmed A Zayed; Zhi-Ping Zhong; Jiarong Guo; Dean R Vik; Maria Consuelo Gazitúa; James M Wainaina; Simon Roux; Matthew B Sullivan
Journal:  PeerJ       Date:  2021-06-14       Impact factor: 2.984

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