| Literature DB >> 27388017 |
Shu Diao1,2, Yimei Hou3, Yunhui Xie1,2, Xiaomei Sun4,5.
Abstract
BACKGROUND: Japanese larch (Larix kaempferi) as a successful exotic species has become one of the most important economic and ecological conifers in China. In order to broaden the genetic resource of Larix kaempferi, an effort was made in 1996 to introduce 128 families from seven seed orchards in Japan, with which to establish two progeny trials in climatically different environments. The experiment was aimed to determine the strategy of early selection, particularly important for long-rotated Japanese larch, and the optimal breeding program for specific environments. RESULT: Growth trajectories revealed different growth performances of stem height (HGT) and diameter at breast height (DBH) in two different environments, Hubei and Liaoning. In both sites, there were marked variabilities in HGT, DBH and volume (VOL) among families at each year. The trends of individual and family heritability and age-age correlations were found to follow a certain dynamic pattern. Based on these trends, the optimum selection age was determined at four years for HGT and five years for DBH in Hubei and Liaoning. Genetic gains for VOL were 34.4 and 6.04 % in Hubei and Liaoning respectively when selection ratio was 10 % at age 16. Type-B correlations were less than 0.67 and rank correlations of breeding value were less than 0.4 for HGT, DBH and VOL between the two sites, revealing that there exist pronounced family-by-site interactions for the growth traits of Larix kaempferi.Entities:
Keywords: Early selection; Family by site interactions; Growth traits; Heritability
Mesh:
Year: 2016 PMID: 27388017 PMCID: PMC4936286 DOI: 10.1186/s12863-016-0400-7
Source DB: PubMed Journal: BMC Genet ISSN: 1471-2156 Impact factor: 2.797
The natural conditions of two progeny trials.
| Hubei | Liaoning | |
|---|---|---|
| Latitude | 30° 48' | 42° 02' |
| Longitude | 110° 3' | 124° 50' |
| Elevation (m) | 1600–1800 | 300 |
| Mean annual rainfall (mm) | 1500–1800 | 780 |
| Soil type | Yellow brown soil of mountain | Brown forest soil of mountain |
| Mean annual temperature | 9 °C | 4.6 °C |
| Extremely low temperature | −10 °C | −37.6 °C |
| Extremely high temperature | 29 °C | 36.5 °C |
| The climatic type | Northern subtropical zone | Continental monsoon climate |
| Annual accumulated temperature ≧10 °C (°C) | 2200–2300 | 2720.3 |
| Annual sunshine hours(h) | 1532.9 | 2433 |
The origin and natural conditions of 132 families planted in progeny tests trials. The S and P in parentheses represent source of seeds and parent stand respectively
| Order of families | Origin | Source of seeds (S) or parent stand (P) | The state of seed collection sites | ||||
|---|---|---|---|---|---|---|---|
| Latitude | Longitude | Altitude (m) | Annual average temperature (°C) | Mean annual rainfall (mm) | |||
| 85–88 | Japan | Bibai in Hokkaido (S) | 43° 20' | 141° 50' | 20 | 7 | 1305 |
| 89–118 | Japan | Kuriyama in Hokkaido (S) | 43° 08' | 141° 45' | 26 | 7.2 | 1238 |
| 198–205 | |||||||
| 207–213 | |||||||
| 119–125 | Japan | Morioka in Iwate-ken (S) | 39° 42' | 141° 10' | 135 | 10.3 | 1310 |
| 126–193 | Japan | Komoro in Nagano (S) | 36° 20' | 138° 40' | 843 | 9.9 | 1578 |
| 194 | Japan | Engaru in Hokkaido (S) | 44° 00' | 143° 20' | 236 | 5.3 | 929 |
| 195–196 | Japan | Esashi in Iwate-ken (S) | 39° 10' | 141° 12' | 40 | 10.7 | 1203 |
| 197 | Japan | Azumino in Nagano (S) | 36° 10' | 137° 45' | 1315 | 7.1 | 1913 |
| 214 | China | Dandong in Liaoning (P) | 40° 30' | 124° 05' | 320 | 8 | 750 |
| 215 | China | Laoshan in Shandong (P) | 36° 05' | 120° 25' | 110 | 12 | 1000 |
| 216 | China | Qingyuan in Liaoning (S) | 42° 45' | 125° 48' | 550 | 6 | 650 |
| 217 | China | Jianshi in Hubei (P) | 30° 45' | 109° 45' | 1700 | 15 | 1600 |
Fig. 1Growth trajectories of different families grown in Hubei and Liaoning. The thin lines with blue color represent the growth performance of different families and the thick lines with red color represent the growth performance on the whole
The variance components with standard error (SE) in parentheses and variation coefficients for growth traits at different age in Hubei and Liaoning (σ 2, σ 2 and σ 2 represent the variance components of family, family by block interaction and residual error respectively; CVG and CVP stand for genetic variation coefficients and phenotypic variation coefficient; Site1 stands for Hubei and Site2 stands for Liaoning)
| Age | σf 2 | σfb 2 | σe 2 | CVG (%) | CVP (%) | |||||
|---|---|---|---|---|---|---|---|---|---|---|
| Site1 | Site2 | Site1 | Site2 | Site1 | Site2 | Site1 | Site2 | Site1 | Site2 | |
| h1 | 1.51E-03***(5.83E-04) | 5.10E-03***(1.13E-03) | 7.47E-03***(9.61E-04) | 3.62E-03***(7.14E-04) | 3.80E-02(1.04E-03) | 1.59E-02(7.00E-04) | 9.30 | 16.07 | 51.85 | 35.31 |
| h2 | 3.52E-03***(1.81E-03) | 1.06E-02***(3.20E-03) | 3.27E-02***(3.33E-03) | 1.73E-02***(3.42E-03) | 9.13E-02(2.65E-03) | 8.01E-02(3.50E-03) | 6.04 | 10.63 | 36.36 | 33.92 |
| h3 | 1.04E-02***(3.72E-03) | 5.80E-02***(5.87E-03) | 1.89E-01(5.02E-03) | 6.09 | 30.27 | |||||
| h4 | 2.67E-02***(7.93E-03) | 2.56E-02***(1.12E-02) | 1.29E-01***(1.15E-02) | 8.99E-02***(1.65E-02) | 2.07E-01(7.02E-03) | 3.58E-01(1.57E-02) | 6.18 | 5.72 | 22.82 | 24.61 |
| h5 | 4.77E-02***(1.19E-02) | 4.02E-02***(1.73E-02) | 1.63E-01***(1.46E-02) | 1.40E-01***(2.48E-02) | 3.83E-01(1.02E-02) | 5.21E-01(2.28E-02) | 6.29 | 4.82 | 22.19 | 20.12 |
| h6 | 7.31E-02***(1.76E-02) | 3.65E-02***(2.06E-02) | 2.26E-01***(2.07E-02) | 1.78E-01***(3.37E-02) | 5.77E-01(1.53E-02) | 7.40E-01(3.25E-02) | 6.15 | 3.48 | 21.27 | 17.82 |
| h7 | 1.11E-01***(2.52E-02) | 4.72E-02***(2.80E-02) | 2.97E-01***(2.78E-02) | 2.33E-01***(4.57E-02) | 7.97E-01(2.12E-02) | 1.06E + 00(4.61E-02) | 6.27 | 3.24 | 20.61 | 17.22 |
| h8 | 1.56E-01***(3.38E-02) | 3.70E-01***(3.54E-02) | 1.04E + 00(2.78E-02) | 6.27 | 19.87 | |||||
| h10 | 2.93E-01***(5.92E-02) | 5.89E-01***(5.85E-02) | 1.27E + 00(4.29E-02) | 6.49 | 17.57 | |||||
| h11 | 3.52E-01***(6.99E-02) | 6.49E-01***(6.73E-02) | 1.57E + 00(5.25E-02) | 6.44 | 17.39 | |||||
| h15 | 6.10E-01***(1.18E-01) | 8.56E-01***(1.10E-01) | 3.17E + 00(1.07E-01) | 6.28 | 17.32 | |||||
| h16 | 6.55E-01***(1.29E-01) | 1.33E-02** (6.65E-02) | 9.22E-01***(1.25E-01) | 6.85E-01***(1.44E-01) | 3.71E + 00(1.25E-01) | 2.02E + 00(1.23E-01) | 6.14 | 0.68 | 17.43 | 9.67 |
| b5 | 1.24E-01***(3.21E-02) | 7.62E-02***(3.56E-02) | 3.84E-01***(4.04E-02) | 2.81E-01***(5.34E-02) | 1.37E + 00(3.65E-02) | 1.22E + 00(5.35E-02) | 9.64 | 7.1 | 37.62 | 32.32 |
| b6 | 1.90E-01***(4.78E-02) | 7.44E-02***(4.24E-02) | 5.65E-01***(5.90E-02) | 2.70E-01***(6.99E-02) | 1.99E + 00(5.25E-02) | 1.98E + 00(8.61E-02) | 8.35 | 4.92 | 31.76 | 27.5 |
| b7 | 2.67E-01***(6.51E-02) | 1.08E-01***(5.58E-02) | 6.97E-01***(7.80E-02) | 2.72E-01***(8.68E-02) | 2.84E + 00(7.52E-02) | 2.70E + 00(1.18E-01) | 7.61 | 4.76 | 28.72 | 25.46 |
| b8 | 3.23E-01***(7.98E-02) | 8.83E-01***(9.74E-02) | 3.42E + 00(9.13E-02) | 6.66 | 25.23 | |||||
| b10 | 5.63E-01***(1.32E-01) | 1.25E + 00***(1.59E-01) | 4.44E + 00(1.50E-01) | 6.19 | 20.62 | |||||
| b11 | 6.52E-01***(1.49E-01) | 1.24E + 00***(1.76E-01) | 5.40E + 00(1.81E-01) | 5.95 | 19.90 | |||||
| b15 | 1.03E + 00***(2.26E-01) | 9.48E-01***(2.60E-01) | 1.07E + 01(3.59E-01) | 5.54 | 19.42 | |||||
| b16 | 1.12E + 00***(2.45E-01) | 2.58E-01* (1.89E-01) | 7.93E-01** (2.84E-01) | 6.76E-01* (3.50E-01) | 1.23E + 01(4.16E-01) | 7.23E + 00(4.37E-01) | 5.48 | 3.02 | 19.56 | 17.00 |
| v5 | 3.59E-07***(8.34E-08) | 3.79E-07***(1.59E-07) | 8.74E-07***(9.35E-08) | 1.20E-06***(2.18E-07) | 3.34E-06(8.86E-08) | 5.01E-06(2.18E-07) | 23.25 | 16.87 | 83.02 | 70.33 |
| v6 | 1.60E-06***(3.58E-07) | 1.11E-06***(5.52E-07) | 3.67E-06***(3.87E-07) | 3.58E-06***(8.40E-07) | 1.36E-05(3.58E-07) | 2.29E-05(9.92E-07) | 21.02 | 11.98 | 72.18 | 59.75 |
| v7 | 5.13E-06***(1.12E-06) | 3.38E-06***(1.57E-06) | 1.04E-05***(1.17E-06) | 8.41E-06***(2.27E-06) | 4.38E-05(1.16E-06) | 6.62E-05(2.87E-06) | 19.55 | 11.62 | 66.48 | 55.81 |
| v8 | 1.36E-05***(2.91E-06) | 2.64E-05***(2.97E-06) | 1.10E-04(2.92E-06) | 18.14 | 60.21 | |||||
| v10 | 7.48E-05***(1.52E-05) | 1.16E-04***(1.51E-05) | 4.40E-04(1.49E-05) | 17.32 | 50.30 | |||||
| v11 | 1.28E-04***(2.56E-05) | 1.75E-04***(2.50E-05) | 7.87E-04(2.63E-05) | 16.71 | 48.75 | |||||
| v15 | 6.04E-04***(1.16E-04) | 4.35E-04***(1.11E-04) | 4.46E-03(1.49E-04) | 15.44 | 46.59 | |||||
| v16 | 7.83E-04***(1.52E-04) | 1.14E-04* (1.11E-04) | 4.72E-04***(1.47E-04) | 5.26E-04** (2.15E-04) | 6.19E-03(2.08E-04) | 4.16E-03(2.52E-04) | 15.08 | 5.56 | 46.49 | 36.04 |
*** = significant at 0.001 level, ** = significant at 0.01 level, * = significant at 0.05 level
Fig. 2The age trends of heritability estimates for growth traits in Hubei. The figures represent the age trends of individual-tree and family heritability estimates for HGT, DBH and VOL respectively in Hubei. The lines with hollow circles represent the family heritability estimates and the lines with solid circles represent the individual heritability estimates and the bars stands for standard errors
Fig. 3Age-age related genetic and phenotypic correlations in Hubei. HGT-HGT16 and DBH-DBH16 represent age-age related genetic correlations and phenotypic correlations between HGT and DBH at early ages and corresponding growth traits at 16 years. HGT-VOL16 and DBH-VOL 16 represent age-age related genetic correlations and phenotypic correlations between HGT and DBH at early ages and VOL at 16 years. The lines with hollow circles represent the phenotypic correlations and the lines with solid circles represent the genetic correlations and the bars stands for standard errors
Type-B genetic correlations with standard error (SE) in parentheses and spearman rank correlations coefficients of family breeding values with Kendall's Tau correlation coefficients in parentheses across Hubei and Liaoning
| Type-B genetic correlations | Rank correlations of family breeding values | |||||
|---|---|---|---|---|---|---|
| Age | HGT | DBH | VOL | HGT | DBH | VOL |
| 1 | 0.27 (0.15) | 0.23* (0.17*) | ||||
| 2 | 0.22 (0.17) | 0.13 (0.08) | ||||
| 4 | 0.27 (0.18) | 0.18 (0.08) | ||||
| 5 | 0.40 (0.15) | 0.27 (0.18) | 0.25 (0.17) | 0.27* (0.19*) | 0.15 (0.11) | 0.20 (0.15) |
| 6 | 0.40 (0.16) | 0.41 (0.18) | 0.36 (0.17) | 0.26* (0.18*) | 0.20 (0.14) | 0.23* (0.16*) |
| 7 | 0.34 (0.16) | 0.38 (0.18) | 0.33 (0.18) | 0.25* (0.17*) | 0.16 (0.12) | 0.24* (0.16*) |
| 16 | 0.50 (0.16) | 0.60 (0.23) | 0.65 (0.18) | 0.35* (0.23*) | 0.24* (0.17) | 0.33** (0.24**) |
** = significant at 0.01 level, * = significant at 0.05 level
Comparison of consistency between early selection and selection at age 16 at 10 % selection ratio (H4 stands for selection at age four based on the HGT as selection criterion; D5 stands for selection at age five based on the DBH as selection criterion; V16 represents for selection at age 16 taking VOL as target traits
| Hubei | Liaoning | |||||||
|---|---|---|---|---|---|---|---|---|
| H4-V16 | D5-V16 | H4-V16 | D5-V16 | |||||
| Early selection ratio | Numbers | Success ratio | Numbers | Success ratio | Numbers | Success ratio | Numbers | Success ratio |
| (%) | (%) | (%) | (%) | |||||
| 10 % | 121 | 48.79 | 159 | 64.11 | 40 | 28.57 | 45 | 32.14 |
| 20 % | 165 | 66.53 | 199 | 80.24 | 74 | 52.86 | 72 | 51.43 |
| 30 % | 194 | 78.23 | 210 | 84.68 | 96 | 68.57 | 101 | 72.14 |
| 40 % | 214 | 86.29 | 229 | 92.34 | 109 | 77.86 | 116 | 82.86 |
| 50 % | 224 | 90.32 | 236 | 95.16 | 123 | 87.86 | 127 | 90.71 |