| Literature DB >> 25078869 |
Meng Lai, Xiaomei Sun, Dongsheng Chen, Yunhui Xie, Shougong Zhang.
Abstract
BACKGROUND: Japanese larch (Larix kaempferi) has been introduced in China at the end of the 19th century, and as one successful exotic species, is becoming the preferred coniferous in northern China and sub-tropical alpine region. The rotation age is about 25-28 years for L. kaempferi as pulpwood in Henan province. Waiting for even one-half rotation age for final evaluation will be inefficient due to accumulated testing costs and delayed return on investment, which suggests that selection at an early age is highly desirable for L. kaempferi improvement programs in Henan province. In this study, we determined age trends of genetic parameters and evaluated early selection efficiency for L. kaempferi in Henan province to find out the appropriate trait for early selection and its selection age.Entities:
Mesh:
Year: 2014 PMID: 25078869 PMCID: PMC4118636 DOI: 10.1186/1471-2156-15-S1-S10
Source DB: PubMed Journal: BMC Genet ISSN: 1471-2156 Impact factor: 2.797
The model parameters, variance components for random effects, and fit statistics for the nonlinear mixed model described in the text (Std. Dev = standard deviation). Fit statistics include the coefficient of determination (R), root mean squared error (RMSE), Akaike information criterion (AIC), and Bayesian criterion (BIC).
| Model | HGT | DBH | |||||||
|---|---|---|---|---|---|---|---|---|---|
| Fixed effects | Parameters | Estimated values | Std. Dev | T value | P value | Estimated values | Std. Dev | T value | P value |
| a | 10.9349 | 0.2444 | 44.7408 | < 0.01 | 9.0885 | 0.2113 | 43.0086 | <0.01 | |
| b | 0.1436 | 0.0045 | 31.8415 | < 0.01 | 0.2489 | 0.0087 | 28.4580 | <0.01 | |
| c | 2.2299 | 0.0497 | 44.8156 | < 0.01 | 5.3868 | 0.2946 | 18.2851 | <0.01 | |
| Random effects | 0.9082 | 0.9761 | |||||||
| 0.0113 | 0.0112 | ||||||||
| 2.4430) | 2.1190 | ||||||||
| 0.0157 | 0.0292 | ||||||||
| -0.00641 | -0.00061 | ||||||||
| -0.0240 | -0.0341 | ||||||||
| Fit statistics | R2 | 0.9543 | 0.9295 | ||||||
| RMSE | 0.5961 | 0.7134 | |||||||
| AIC | 34744.47 | 32408.32 | |||||||
| BIC | 34803.12 | 32464.59 | |||||||
Mean values, ranges and F values (**Significant at 0.01 level) for the growth traits at different ages (s.e. = standard error).
| Traits | Age | Mean | Minimum | Maximum | s.e. | F Value |
|---|---|---|---|---|---|---|
| HGT | 2 | 0.50 | 0.29 | 0.86 | 0.0121 | 4.35** |
| (m) | 3 | 1.06 | 0.62 | 1.79 | 0.0244 | 4.20** |
| 4 | 1.73 | 1.02 | 2.88 | 0.0382 | 4.05** | |
| 5 | 2.47 | 1.46 | 4.02 | 0.052 | 4.00** | |
| 6 | 3.21 | 1.91 | 5.16 | 0.0655 | 3.77** | |
| 7 | 3.95 | 2.37 | 6.25 | 0.0775 | 3.63** | |
| 8 | 4.66 | 2.80 | 7.26 | 0.0884 | 3.49** | |
| 9 | 5.33 | 3.22 | 8.18 | 0.0979 | 3.37** | |
| 10 | 5.94 | 3.60 | 9.01 | 0.1062 | 3.25** | |
| 11 | 6.51 | 3.95 | 9.74 | 0.1133 | 3.14** | |
| 12 | 7.01 | 4.28 | 10.39 | 0.1196 | 3.05** | |
| 13 | 7.47 | 4.57 | 10.96 | 0.1249 | 2.96** | |
| 14 | 7.89 | 4.84 | 11.46 | 0.1294 | 2.88** | |
| 15 | 8.25 | 5.07 | 11.89 | 0.1334 | 2.81** | |
| DBH | 5 | 1.50 | 0.72 | 2.89 | 0.0457 | 3.28** |
| (cm) | 6 | 2.35 | 1.19 | 4.36 | 0.0662 | 3.26** |
| 7 | 3.26 | 1.71 | 5.82 | 0.0851 | 3.27** | |
| 8 | 4.15 | 2.24 | 7.18 | 0.1015 | 3.26** | |
| 9 | 4.97 | 2.76 | 8.37 | 0.1148 | 3.24** | |
| 10 | 5.69 | 3.23 | 9.38 | 0.1254 | 3.20** | |
| 11 | 6.32 | 3.65 | 10.21 | 0.1334 | 3.16** | |
| 12 | 6.85 | 4.03 | 10.88 | 0.1395 | 3.11** | |
| 13 | 7.29 | 4.34 | 11.41 | 0.1441 | 3.06** | |
| 14 | 7.64 | 4.61 | 11.83 | 0.1476 | 3.01** | |
| 15 | 7.94 | 4.83 | 12.16 | 0.1502 | 2.97** | |
| VOL | 5 | 4.15E-04 | 5.78E-05 | 1.99E-03 | 3.44E-05 | 2.74** |
| (m3) | 6 | 1.20E-03 | 1.88E-04 | 5.32E-03 | 9.13E-05 | 2.81** |
| 7 | 2.63E-03 | 4.46E-04 | 1.07E-02 | 1.83E-04 | 2.87** | |
| 8 | 4.73E-03 | 8.62E-04 | 1.80E-02 | 3.07E-04 | 2.91** | |
| 9 | 7.41E-03 | 1.44E-03 | 2.67E-02 | 4.52E-04 | 2.92** | |
| 10 | 1.04E-02 | 2.14E-03 | 3.58E-02 | 6.05E-04 | 2.91** | |
| 11 | 1.37E-02 | 2.93E-03 | 4.48E-02 | 7.57E-04 | 2.89** | |
| 12 | 1.71E-02 | 3.77E-03 | 5.34E-02 | 9.01E-04 | 2.86** | |
| 13 | 2.02E-02 | 4.61E-03 | 6.11E-02 | 1.03E-03 | 2.82** | |
| 14 | 2.32E-02 | 5.41E-03 | 6.80E-02 | 1.15E-03 | 2.78** | |
| 15 | 2.58E-02 | 6.17E-03 | 7.39E-02 | 1.25E-03 | 2.74** | |
The variances associated with clone (), residual error () and phenotype (), genetic variation coefficients (CVG), clonal repeatability (R) and genetic gains (ΔG) with 5% selection rate for the growth traits at different ages.
| Traits | Age | CVG (%) | R | ΔG (%) | |||
|---|---|---|---|---|---|---|---|
| HGT | 2 | 0.0087 | 0.0104 | 0.0113 | 18.65 | 0.77 | 33.77 |
| 3 | 0.0353 | 0.0441 | 0.0463 | 17.72 | 0.76 | 31.92 | |
| 4 | 0.0855 | 0.1121 | 0.1135 | 16.90 | 0.75 | 30.26 | |
| 5 | 0.1586 | 0.2117 | 0.2102 | 16.12 | 0.75 | 28.65 | |
| 6 | 0.2445 | 0.3540 | 0.3335 | 15.40 | 0.73 | 27.27 | |
| 7 | 0.3396 | 0.5168 | 0.4688 | 14.75 | 0.72 | 25.90 | |
| 8 | 0.4353 | 0.6978 | 0.6098 | 14.16 | 0.71 | 24.68 | |
| 9 | 0.5262 | 0.8893 | 0.7485 | 13.61 | 0.70 | 23.54 | |
| 10 | 0.6094 | 1.0832 | 0.8802 | 13.14 | 0.69 | 22.56 | |
| 11 | 0.6839 | 1.2760 | 1.0029 | 12.70 | 0.68 | 21.64 | |
| 12 | 0.7494 | 1.4646 | 1.1156 | 12.35 | 0.67 | 20.88 | |
| 13 | 0.8057 | 1.6447 | 1.2169 | 12.02 | 0.66 | 20.17 | |
| 14 | 0.8534 | 1.8150 | 1.3072 | 11.71 | 0.65 | 19.52 | |
| 15 | 0.8947 | 1.9749 | 1.3884 | 11.47 | 0.64 | 18.99 | |
| DBH | 5 | 0.1136 | 0.1991 | 0.1634 | 22.47 | 0.70 | 38.65 |
| 6 | 0.2368 | 0.4191 | 0.3416 | 20.71 | 0.69 | 35.57 | |
| 7 | 0.3928 | 0.6924 | 0.5659 | 19.23 | 0.69 | 33.04 | |
| 8 | 0.5576 | 0.9855 | 0.8040 | 17.99 | 0.69 | 30.91 | |
| 9 | 0.7116 | 1.2699 | 1.0291 | 16.97 | 0.69 | 29.12 | |
| 10 | 0.8426 | 1.5308 | 1.2253 | 16.13 | 0.69 | 27.60 | |
| 11 | 0.9484 | 1.7586 | 1.3881 | 15.41 | 0.68 | 26.28 | |
| 12 | 1.0300 | 1.9544 | 1.5186 | 14.82 | 0.68 | 25.17 | |
| 13 | 1.0905 | 2.1198 | 1.6205 | 14.32 | 0.67 | 24.24 | |
| 14 | 1.1361 | 2.2572 | 1.7004 | 13.95 | 0.67 | 23.53 | |
| 15 | 1.1673 | 2.3724 | 1.7604 | 13.61 | 0.66 | 22.86 | |
| VOL | 5 | 5.86E-08 | 1.34E-07 | 9.21E-08 | 58.33 | 0.64 | 95.99 |
| 6 | 4.18E-07 | 9.28E-07 | 6.50E-07 | 53.88 | 0.64 | 89.13 | |
| 7 | 1.72E-06 | 3.68E-06 | 2.64E-06 | 49.87 | 0.65 | 83.04 | |
| 8 | 4.85E-06 | 1.02E-05 | 7.40E-06 | 46.56 | 0.66 | 77.76 | |
| 9 | 1.05E-05 | 2.18E-05 | 1.60E-05 | 43.73 | 0.66 | 73.20 | |
| 10 | 1.87E-05 | 3.93E-05 | 2.85E-05 | 41.58 | 0.66 | 69.45 | |
| 11 | 2.93E-05 | 6.20E-05 | 4.48E-05 | 39.51 | 0.65 | 65.92 | |
| 12 | 4.12E-05 | 8.87E-05 | 6.34E-05 | 37.54 | 0.65 | 62.44 | |
| 13 | 5.37E-05 | 1.18E-04 | 8.32E-05 | 36.28 | 0.65 | 60.13 | |
| 14 | 6.62E-05 | 1.48E-04 | 1.03E-04 | 35.07 | 0.64 | 57.95 | |
| 15 | 7.79E-05 | 1.79E-04 | 1.23E-04 | 34.21 | 0.64 | 56.24 | |
Estimated genetic correlations (rg) and phenotypic correlations (rp), for height at age 15 (HGT-15) with various heights, and diameter at age 15 with various diameters.
| Age | HGT | DBH | ||
|---|---|---|---|---|
| rg | rp | rg | rp | |
| 2 | 0.904 | 0.887** | - | - |
| 3 | 0.917 | 0.906** | - | - |
| 4 | 0.928 | 0.920** | - | - |
| 5 | 0.939 | 0.934** | 0.943 | 0.905** |
| 6 | 0.950 | 0.947** | 0.956 | 0.926** |
| 7 | 0.960 | 0.958** | 0.966 | 0.944** |
| 8 | 0.970 | 0.969** | 0.976 | 0.960** |
| 9 | 0.978 | 0.977** | 0.983 | 0.973** |
| 10 | 0.985 | 0.985** | 0.989 | 0.983** |
| 11 | 0.990 | 0.990** | 0.994 | 0.990** |
| 12 | 0.995 | 0.995** | 0.997 | 0.995** |
| 13 | 0.997 | 0.997** | 0.999 | 0.998** |
| 14 | 0.999 | 0.999** | 1.000 | 0.999** |
| 15 | 1.000 | 1.000** | 1.000 | 1.000** |
**Significant at 0.01 level.
Estimated genetic correlations (rg) and phenotypic correlations (rp), for tree volume at age-15 (VOL-15) with various heights or diameters.
| Age | HGT | DBH | ||
|---|---|---|---|---|
| rg | rp | rg | rp | |
| 2 | 0.882 | 0.849** | - | - |
| 3 | 0.890 | 0.867** | - | - |
| 4 | 0.917 | 0.879** | - | - |
| 5 | 0.919 | 0.889** | 0.923 | 0.897** |
| 6 | 0.926 | 0.899** | 0.935 | 0.912** |
| 7 | 0.942 | 0.908** | 0.943 | 0.925** |
| 8 | 0.944 | 0.915** | 0.952 | 0.936** |
| 9 | 0.955 | 0.922** | 0.960 | 0.945** |
| 10 | 0.955 | 0.927** | 0.964 | 0.951** |
| 11 | 0.964 | 0.930** | 0.965 | 0.955** |
| 12 | 0.964 | 0.932** | 0.971 | 0.957** |
| 13 | 0.964 | 0.933** | 0.971 | 0.958** |
| 14 | 0.969 | 0.934** | 0.972 | 0.958** |
| 15 | 0.969 | 0.934** | 0.972 | 0.958** |
**Significant at 0.01 level.
Figure 1Selection efficiency (.
Figure 2Selection efficiency (.