Literature DB >> 27375941

Analysis of dengue infection based on Raman spectroscopy and support vector machine (SVM).

Saranjam Khan1, Rahat Ullah1, Asifullah Khan2, Noorul Wahab2, Muhammad Bilal1, Mushtaq Ahmed1.   

Abstract

The current study presents the use of Raman spectroscopy combined with support vector machine (SVM) for the classification of dengue suspected human blood sera. Raman spectra for 84 clinically dengue suspected patients acquired from Holy Family Hospital, Rawalpindi, Pakistan, have been used in this study.The spectral differences between dengue positive and normal sera have been exploited by using effective machine learning techniques. In this regard, SVM models built on the basis of three different kernel functions including Gaussian radial basis function (RBF), polynomial function and linear functionhave been employed to classify the human blood sera based on features obtained from Raman Spectra.The classification model have been evaluated with the 10-fold cross validation method. In the present study, the best performance has been achieved for the polynomial kernel of order 1. A diagnostic accuracy of about 85% with the precision of 90%, sensitivity of 73% and specificity of 93% has been achieved under these conditions.

Entities:  

Keywords:  (300.0300) Spectroscopy; (300.6450) Spectroscopy, Raman

Year:  2016        PMID: 27375941      PMCID: PMC4918579          DOI: 10.1364/BOE.7.002249

Source DB:  PubMed          Journal:  Biomed Opt Express        ISSN: 2156-7085            Impact factor:   3.732


  19 in total

1.  Protein subcellular localization of fluorescence imagery using spatial and transform domain features.

Authors:  Muhammad Tahir; Asifullah Khan; Abdul Majid
Journal:  Bioinformatics       Date:  2011-11-15       Impact factor: 6.937

2.  Investigation of support vector machines and Raman spectroscopy for lymph node diagnostics.

Authors:  Martina Sattlecker; Conrad Bessant; Jennifer Smith; Nick Stone
Journal:  Analyst       Date:  2010-03-05       Impact factor: 4.616

3.  Classification of colonic tissues using near-infrared Raman spectroscopy and support vector machines.

Authors:  Effendi Widjaja; Wei Zheng; Zhiwei Huang
Journal:  Int J Oncol       Date:  2008-03       Impact factor: 5.650

4.  Raman spectroscopy coupled with advanced statistics for differentiating menstrual and peripheral blood.

Authors:  Aliaksandra Sikirzhytskaya; Vitali Sikirzhytski; Igor K Lednev
Journal:  J Biophotonics       Date:  2012-11-23       Impact factor: 3.207

5.  Statistically quantified measurement of an Alzheimer's marker by surface-enhanced Raman scattering.

Authors:  Ričardas Buividas; Nerijus Dzingelevičius; Reda Kubiliūtė; Paul R Stoddart; Vi Khanh Truong; Elena P Ivanova; Saulius Juodkazis
Journal:  J Biophotonics       Date:  2014-08-13       Impact factor: 3.207

6.  Dengue virus markers of virulence and pathogenicity.

Authors:  Rebeca Rico-Hesse
Journal:  Future Virol       Date:  2009-11-01       Impact factor: 1.831

7.  Discrimination of normal and malignant mucosal tissues of the colon by Raman spectroscopy.

Authors:  M V P Chowdary; K Kalyan Kumar; Keerthi Thakur; A Anand; Jacob Kurien; C Murali Krishna; Stanley Mathew
Journal:  Photomed Laser Surg       Date:  2007-08       Impact factor: 2.796

8.  Epidemiology of dengue: past, present and future prospects.

Authors:  Natasha Evelyn Anne Murray; Mikkel B Quam; Annelies Wilder-Smith
Journal:  Clin Epidemiol       Date:  2013-08-20       Impact factor: 4.790

9.  Understanding and using sensitivity, specificity and predictive values.

Authors:  Rajul Parikh; Annie Mathai; Shefali Parikh; G Chandra Sekhar; Ravi Thomas
Journal:  Indian J Ophthalmol       Date:  2008 Jan-Feb       Impact factor: 1.848

10.  Dengue fever: new paradigms for a changing epidemiology.

Authors:  Debarati Guha-Sapir; Barbara Schimmer
Journal:  Emerg Themes Epidemiol       Date:  2005-03-02
View more
  12 in total

1.  Lactate based optical screening of dengue virus infection in human sera using Raman spectroscopy.

Authors:  Muhammad Bilal; Rahat Ullah; Saranjam Khan; Hina Ali; Muhammad Saleem; Mushtaq Ahmed
Journal:  Biomed Opt Express       Date:  2017-01-31       Impact factor: 3.732

2.  Use of Raman spectroscopy to screen diabetes mellitus with machine learning tools.

Authors:  Edgar Guevara; Juan Carlos Torres-Galván; Miguel G Ramírez-Elías; Claudia Luevano-Contreras; Francisco Javier González
Journal:  Biomed Opt Express       Date:  2018-09-26       Impact factor: 3.732

3.  Diagnosis of dengue virus infection using spectroscopic images and deep learning.

Authors:  Mehdi Hassan; Safdar Ali; Muhammad Saleem; Muhammad Sanaullah; Labiba Gillani Fahad; Jin Young Kim; Hani Alquhayz; Syed Fahad Tahir
Journal:  PeerJ Comput Sci       Date:  2022-06-01

4.  Raman spectroscopy combined with a support vector machine for differentiating between feeding male and female infants mother's milk.

Authors:  Rahat Ullah; Saranjam Khan; Samina Javaid; Hina Ali; Muhammad Bilal; Muhammad Saleem
Journal:  Biomed Opt Express       Date:  2018-01-26       Impact factor: 3.732

5.  Analysis of hepatitis C infection using Raman spectroscopy and proximity based classification in the transformed domain.

Authors:  Anabia Sohail; Saranjam Khan; Rahat Ullah; Shahzad Ahmad Qureshi; Muhammad Bilal; Asifullah Khan
Journal:  Biomed Opt Express       Date:  2018-04-03       Impact factor: 3.732

6.  Identification of cow and buffalo milk based on Beta carotene and vitamin-A concentration using fluorescence spectroscopy.

Authors:  Rahat Ullah; Saranjam Khan; Hina Ali; Muhammad Bilal; Muhammad Saleem
Journal:  PLoS One       Date:  2017-05-18       Impact factor: 3.240

7.  Single Particle Differentiation through 2D Optical Fiber Trapping and Back-Scattered Signal Statistical Analysis: An Exploratory Approach.

Authors:  Joana S Paiva; Rita S R Ribeiro; João P S Cunha; Carla C Rosa; Pedro A S Jorge
Journal:  Sensors (Basel)       Date:  2018-02-27       Impact factor: 3.576

Review 8.  Extracellular Vesicle Identification Using Label-Free Surface-Enhanced Raman Spectroscopy: Detection and Signal Analysis Strategies.

Authors:  Hyunku Shin; Dongkwon Seo; Yeonho Choi
Journal:  Molecules       Date:  2020-11-09       Impact factor: 4.411

9.  Prediction of hepatitis E using machine learning models.

Authors:  Yanhui Guo; Yi Feng; Fuli Qu; Li Zhang; Bingyu Yan; Jingjing Lv
Journal:  PLoS One       Date:  2020-09-17       Impact factor: 3.240

10.  Software Defect Prediction for Healthcare Big Data: An Empirical Evaluation of Machine Learning Techniques.

Authors:  Bilal Khan; Rashid Naseem; Muhammad Arif Shah; Karzan Wakil; Atif Khan; M Irfan Uddin; Marwan Mahmoud
Journal:  J Healthc Eng       Date:  2021-03-15       Impact factor: 2.682

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.